Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0944
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49800| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     28   7.5  
SB_50118| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_49800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 449 IFNYFIRILFYYFTSI*IYRASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLIW 613
           IF     +L +Y+T   I   +  + DRI     ++ T   GI+VI+G L+ ++W
Sbjct: 58  IFWMTAAMLVFYYTDFYI---AVKVDDRINRPWLYLGTALIGINVIVG-LYFVVW 108


>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = +2

Query: 458  YFIRILFYYFTSI*IYRASFT--IADRIYGSTFFIATGFHGIHVIIG------TLFLLIW 613
            YF   +FY+  SI  Y  S T     RI+   ++I   F  + +I+        +F ++W
Sbjct: 829  YFAMTVFYFLLSILTYNVSSTKQFRARIHNGFWYIKLSFLSLLLIVAFYIPFTKMFGMVW 888

Query: 614  LY 619
            +Y
Sbjct: 889  MY 890


>SB_50118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 587 IGTLFLLIWLYSTF 628
           IG  FL++W+YSTF
Sbjct: 15  IGGFFLIVWIYSTF 28


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,152,897
Number of Sequences: 59808
Number of extensions: 187777
Number of successful extensions: 272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)