Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0943
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   7.9  

>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 28/123 (22%), Positives = 51/123 (41%)
 Frame = +2

Query: 11  LKTFLLNL*S*SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 190
           +K F+  L S  +  E + K    T+ +       +  +G    K  + V P + +  + 
Sbjct: 19  IKRFVFELSSLGLSAETISKLMAPTTVDPQQAITLSYSLG----KEGHIVVPKIIINVNF 74

Query: 191 DEXNLVTSSTFKTTEMKFKPGESSKRTALTVLR*NPYAHSKATPSSKSRRPPTVLKSXTS 370
           D+       T K     FK   +S    +T +R N  ++  +TPS  +++PPT      S
Sbjct: 75  DKLK-----TDKFAASMFKQLNASNM--ITTVRSNYASNVPSTPSDSTQQPPTNTLPSVS 127

Query: 371 GNS 379
            +S
Sbjct: 128 ASS 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,782
Number of Sequences: 5004
Number of extensions: 41653
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)