Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0943
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15)           31   1.2  
SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15)
          Length = 1019

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 661 LPWSLTYFKFRHRHSLLQFER-*TMTDVKTK 572
           LPW++++ KFR +HSLL   R  +  DVK K
Sbjct: 275 LPWAISHGKFRDKHSLLHTLRDNSSNDVKEK 305


>SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 256 EFEEDRADGAKVKSVCTFEGNTLK 327
           E E+D  DG+K  S CTFEG T++
Sbjct: 27  EHEKDLRDGSKRISGCTFEGITMQ 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,446,982
Number of Sequences: 59808
Number of extensions: 325907
Number of successful extensions: 785
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)