Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0943
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical pr...    77   1e-14
AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding...    73   3e-13
Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical pr...    70   1e-12
AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding...    66   3e-11
AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding...    62   5e-10
AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding...    62   5e-10
U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical pr...    35   0.063
U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical pr...    35   0.063
U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical pr...    35   0.063
U64855-7|AAB04984.1|  145|Caenorhabditis elegans Lipid binding p...    33   0.19 
U40420-6|ABD63223.1|  150|Caenorhabditis elegans Lipid binding p...    29   2.4  
U40420-5|AAA81433.2|  165|Caenorhabditis elegans Lipid binding p...    29   2.4  
U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding p...    29   4.2  
U40420-7|AAA81434.1|  159|Caenorhabditis elegans Lipid binding p...    29   4.2  
AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical...    28   7.3  

>Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.2 protein.
          Length = 137

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 36/67 (53%), Positives = 49/67 (73%)
 Frame = +2

Query: 56  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEXNLVTSSTFKTTE 235
           +F+G+ +K+  +ENFDE+MK IGVGLITRKAA  + P +E+R DG+  N    STFK T+
Sbjct: 6   DFIGR-WKLVQTENFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTK 64

Query: 236 MKFKPGE 256
           + FK GE
Sbjct: 65  LSFKLGE 71


>AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding
           protein protein 6 protein.
          Length = 135

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 36/75 (48%), Positives = 50/75 (66%)
 Frame = +2

Query: 47  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEXNLVTSSTFK 226
           +  EFVG+ +K+  SENF+E+MK +GVGLITRKAA  + PT+E++ +GD       STFK
Sbjct: 1   MSQEFVGR-WKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFK 59

Query: 227 TTEMKFKPGESSKRT 271
            T + FK G+    T
Sbjct: 60  NTTLSFKLGQEFDET 74



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 253 REFEEDRADGAKVKSVCTFEGNTLKQVQK 339
           +EF+E   DG  VKSV  FE      +QK
Sbjct: 69  QEFDETTPDGRTVKSVVNFENGKFIHIQK 97


>Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.6 protein.
          Length = 137

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 31/64 (48%), Positives = 47/64 (73%)
 Frame = +2

Query: 56  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEXNLVTSSTFKTTE 235
           EF+G+ +K+  SENF+E++K IGVGL+ RKAA+  +PT+E++ DGD  +    STFK  +
Sbjct: 6   EFIGR-WKLVHSENFEEYLKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNNK 64

Query: 236 MKFK 247
           + FK
Sbjct: 65  LAFK 68


>AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding
           protein protein 5 protein.
          Length = 136

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 29/66 (43%), Positives = 49/66 (74%)
 Frame = +2

Query: 56  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEXNLVTSSTFKTTE 235
           +FVG+ +K+  SENF++++K +GVGL+ RKAA A  PT+E++ +G++ ++   STFK T 
Sbjct: 5   QFVGR-WKLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTT 63

Query: 236 MKFKPG 253
           ++F  G
Sbjct: 64  LEFTLG 69


>AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform b protein.
          Length = 137

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = +2

Query: 47  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEXNLVTSSTFK 226
           I+ + VGK +   SSENFDE++K +GVG   R  A    P +E   +GDE  + ++STFK
Sbjct: 3   IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 61

Query: 227 TTEMKFKPGESS-KRTA 274
              +K+K G +S ++TA
Sbjct: 62  NYTLKWKLGTASDEKTA 78


>AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform a protein.
          Length = 152

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = +2

Query: 47  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEXNLVTSSTFK 226
           I+ + VGK +   SSENFDE++K +GVG   R  A    P +E   +GDE  + ++STFK
Sbjct: 18  IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 76

Query: 227 TTEMKFKPGESS-KRTA 274
              +K+K G +S ++TA
Sbjct: 77  NYTLKWKLGTASDEKTA 93


>U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical
           protein F08F8.9c protein.
          Length = 517

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +2

Query: 86  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEXNLVTSSTFKTTEMKFKPGESSK 265
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP +  K
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKPPKPPK 61

Query: 266 R 268
           +
Sbjct: 62  Q 62


>U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical
           protein F08F8.9a protein.
          Length = 626

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +2

Query: 86  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEXNLVTSSTFKTTEMKFKPGESSK 265
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP +  K
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKPPKPPK 61

Query: 266 R 268
           +
Sbjct: 62  Q 62


>U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical
           protein F08F8.9b protein.
          Length = 624

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +2

Query: 86  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEXNLVTSSTFKTTEMKFKPGESSK 265
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP +  K
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKPPKPPK 61

Query: 266 R 268
           +
Sbjct: 62  Q 62


>U64855-7|AAB04984.1|  145|Caenorhabditis elegans Lipid binding
           protein protein 4 protein.
          Length = 145

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 44  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAAN--AVTPTVELRKDGDEXNLVTSS 217
           S+  +F G+ Y++  SENFDEF+ + GV    R+      +T  +   ++  + N+   +
Sbjct: 2   SVPDKFFGR-YQLDKSENFDEFLSSKGVNWFVRQMIKLAGLTKIISQNQEAGKYNMENLT 60

Query: 218 TFKTT 232
           + K T
Sbjct: 61  SKKNT 65


>U40420-6|ABD63223.1|  150|Caenorhabditis elegans Lipid binding
           protein protein 3,isoform b protein.
          Length = 150

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 47  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRK 145
           I  +F GK Y +  SENFDEF+   GV    R+
Sbjct: 8   IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQ 39


>U40420-5|AAA81433.2|  165|Caenorhabditis elegans Lipid binding
           protein protein 3,isoform a protein.
          Length = 165

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 47  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRK 145
           I  +F GK Y +  SENFDEF+   GV    R+
Sbjct: 23  IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQ 54


>U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding
           protein protein 2 protein.
          Length = 161

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 74  YKMTSSENFDEFMKTIGVGLITRKAANAVT 163
           + +  SENFDE++   G G  TRK     T
Sbjct: 30  FDLDHSENFDEYLTAKGYGWFTRKLVTFAT 59


>U40420-7|AAA81434.1|  159|Caenorhabditis elegans Lipid binding
           protein protein 1 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 74  YKMTSSENFDEFMKTIGVGLITRKAANAVT 163
           + +  SENFDE++   G G  TRK     T
Sbjct: 28  FDLDHSENFDEYLTAKGYGWFTRKLVTFAT 57


>AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical
           protein F16B4.11 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 119 IGVGLITRKAANAVTPTVELRKDGDEXNL 205
           + + L+  KA N +   V +RKDGD  NL
Sbjct: 166 VDISLLVDKATNYILNPVLIRKDGDMSNL 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,498,864
Number of Sequences: 27780
Number of extensions: 242611
Number of successful extensions: 737
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)