Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0941
(693 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4VWW5 Cluster: Ribosomal protein 3/homing endonuclease... 35 2.2
UniRef50_A3EXC9 Cluster: Replicase polyprotein 1ab (pp1ab) (ORF1... 33 5.0
UniRef50_Q6ZGY0 Cluster: Putative uncharacterized protein OJ1743... 33 6.6
UniRef50_Q9VII1 Cluster: CG9336-PA; n=11; Sophophora|Rep: CG9336... 33 6.6
UniRef50_UPI0000E4A7E9 Cluster: PREDICTED: hypothetical protein;... 33 8.8
UniRef50_Q3JRI0 Cluster: Putative uncharacterized protein; n=12;... 33 8.8
UniRef50_Q0SA78 Cluster: Cation-transporting ATPase; n=1; Rhodoc... 33 8.8
UniRef50_Q4WK66 Cluster: Dual specificity phosphatase catalytic ... 33 8.8
>UniRef50_Q4VWW5 Cluster: Ribosomal protein 3/homing
endonuclease-like protein fusion; n=2; Ophiostoma
novo-ulmi subsp. americana|Rep: Ribosomal protein
3/homing endonuclease-like protein fusion - Ophiostoma
novo-ulmi subsp. americana
Length = 715
Score = 34.7 bits (76), Expect = 2.2
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 437 ILKNLL*I-SVHFHTSVPIYTNENVFIKELILKKTW*NSQYCLKQ*RKFHFNLRNKK 604
++KNL+ + S+HF T + N+N+F E + KK N++Y + K +FNL N K
Sbjct: 141 LIKNLIFLYSLHFKTKSYLEKNKNLFFFESLKKKL--NNKYEIFNKLKLNFNLNNLK 195
>UniRef50_A3EXC9 Cluster: Replicase polyprotein 1ab (pp1ab) (ORF1ab
polyprotein) [Includes: Replicase polyprotein 1a (pp1a)
(ORF1A)] [Contains: Non-structural protein 1 (nsp1)
(Leader protein); Non-structural protein 2 (nsp2) (p65
homolog); Non-structural protein 3 (EC 3.4.22.-) (nsp3)
(Papain- like proteinase) (PL-PRO) (PL2-PRO);
Non-structural protein 4 (nsp4); 3C-like proteinase (EC
3.4.22.-) (3CL-PRO) (3CLp) (nsp5); Non- structural
protein 6 (nsp6); Non-structural protein 7 (nsp7); Non-
structural protein 8 (nsp8); Non-structural protein 9
(nsp9); Non- structural protein 10 (nsp10) (Growth
factor-like peptide) (GFL); RNA- directed RNA polymerase
(EC 2.7.7.48) (RdRp) (Pol) (nsp12); Helicase (Hel)
(nsp13); Exoribonuclease (EC 3.1.13.-) (ExoN) (nsp14);
Uridylate-specific endoribonuclease (EC 3.1.-.-) (NendoU)
(nsp15); Putative 2'-O-methyl transferase (EC 2.1.1.-)
(nsp16)]; n=49; Coronavirus|Rep: Replicase polyprotein
1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase
polyprotein 1a (pp1a) (ORF1A)] [Contains: Non-structural
protein 1 (nsp1) (Leader protein); Non-structural protein
2 (nsp2) (p65 homolog); Non-structural protein 3 (EC
3.4.22.-) (nsp3) (Papain- like proteinase) (PL-PRO)
(PL2-PRO); Non-structural protein 4 (nsp4); 3C-like
proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (nsp5); Non-
structural protein 6 (nsp6); Non-structural protein 7
(nsp7); Non- structural protein 8 (nsp8); Non-structural
protein 9 (nsp9); Non- structural protein 10 (nsp10)
(Growth factor-like peptide) (GFL); RNA- directed RNA
polymerase (EC 2.7.7.48) (RdRp) (Pol) (nsp12); Helicase
(Hel) (nsp13); Exoribonuclease (EC 3.1.13.-) (ExoN)
(nsp14); Uridylate-specific endoribonuclease (EC 3.1.-.-)
(NendoU) (nsp15); Putative 2'-O-methyl transferase (EC
2.1.1.-) (nsp16)] - Bat coronavirus HKU5 (BtCoV)
(BtCoV/HKU5/2004)
Length = 7182
Score = 33.5 bits (73), Expect = 5.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 243 LDLFLLSPTGHIRSDRYVFRFQTIISILYIFFTFSLTHQNIGN-ECRFGRAKQ 398
L+ F+ P G + SDR V + I+S Y +F +L N GN + G KQ
Sbjct: 6648 LERFMSLPNGILISDRKVKNYPCIVSSNYAYFNGTLIRDNTGNSQSSDGEVKQ 6700
>UniRef50_Q6ZGY0 Cluster: Putative uncharacterized protein
OJ1743_B12.38; n=2; Oryza sativa|Rep: Putative
uncharacterized protein OJ1743_B12.38 - Oryza sativa
subsp. japonica (Rice)
Length = 596
Score = 33.1 bits (72), Expect = 6.6
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = -3
Query: 199 LRAVSDRGVGGELDNSAGVLGIVGV-DIQASTDNSSALHDDLVTVSR 62
+R + D GVG E++ G I+G+ +Q STD+S+++ +++ + R
Sbjct: 390 MRRMEDVGVGLEIETRPGGCAIIGLKPLQLSTDHSTSIEEEVHRIKR 436
>UniRef50_Q9VII1 Cluster: CG9336-PA; n=11; Sophophora|Rep: CG9336-PA
- Drosophila melanogaster (Fruit fly)
Length = 148
Score = 33.1 bits (72), Expect = 6.6
Identities = 24/78 (30%), Positives = 37/78 (47%)
Frame = +2
Query: 11 YLRNILPVEVLNSVTGAPRYCHKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNTAIAD 190
YL+N P L + TG + + V +VR+C + N+ Q C+ S+ ++
Sbjct: 59 YLQNFFP---LRNATGCMKKTLESVAGHPQIVRSCYFGDINNIQAGCQ-----SDPSMP- 109
Query: 191 SAKVKSCAVCNKDNCNGA 244
K C VC KD CNG+
Sbjct: 110 FVKQLGCDVCTKDECNGS 127
>UniRef50_UPI0000E4A7E9 Cluster: PREDICTED: hypothetical protein;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 126
Score = 32.7 bits (71), Expect = 8.8
Identities = 25/72 (34%), Positives = 34/72 (47%)
Frame = +2
Query: 29 PVEVLNSVTGAPRYCHKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNTAIADSAKVKS 208
P L ++T PR C K + GT+VR+C D + TC EL N D +
Sbjct: 44 PFVSLGALT-EPR-CMKQIESDGTIVRSCSD------RTTCTTQELI-NKCSGDEVGCRI 94
Query: 209 CAVCNKDNCNGA 244
C C+ +NCN A
Sbjct: 95 C--CDGNNCNSA 104
>UniRef50_Q3JRI0 Cluster: Putative uncharacterized protein; n=12;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 1710b)
Length = 521
Score = 32.7 bits (71), Expect = 8.8
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 289 RSERMWPVGERR-NRSSSVTVVLVAHSAGLDLRAVSDRGVGGE 164
R +R+ P+GERR R V V GLD R + +RG GGE
Sbjct: 258 RRKRVDPLGERRPQRGRQVLAVDARDLLGLDRRDLRERGHGGE 300
>UniRef50_Q0SA78 Cluster: Cation-transporting ATPase; n=1;
Rhodococcus sp. RHA1|Rep: Cation-transporting ATPase -
Rhodococcus sp. (strain RHA1)
Length = 919
Score = 32.7 bits (71), Expect = 8.8
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Frame = -3
Query: 250 RSSSVTVVLVAHSAGLDLR------AVSDRGVGGELDNSAGVLGIVGVDIQASTDN 101
R ++ V AH AG+D+R A++ +G EL G +G G ++QA TD+
Sbjct: 547 RPEAIESVRTAHEAGIDVRMITGDHAITASAIGAELGLGPGAIG--GAELQAMTDD 600
>UniRef50_Q4WK66 Cluster: Dual specificity phosphatase catalytic
domain protein; n=7; Eurotiomycetidae|Rep: Dual
specificity phosphatase catalytic domain protein -
Aspergillus fumigatus (Sartorya fumigata)
Length = 745
Score = 32.7 bits (71), Expect = 8.8
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = -3
Query: 268 VGERRNRSSSVTVVLVAHSAGLDLRAV---SDRGVGGELDNSAGVLGIVGVDIQAS--TD 104
+ + R+R + VVL+ HS G L A+ S +G EL +LG+V + +AS T
Sbjct: 265 IEQHRDREAGQKVVLIGHSMGCSLSALLASSASSIGSELKEH--ILGLVAISPRASPPTP 322
Query: 103 NSSALHDDLVTVSRSSRNAVQDFDRQ 26
+ A + L+ + S + + +DR+
Sbjct: 323 DEVASYRRLLRIPESIFDMWRYWDRR 348
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,220,682
Number of Sequences: 1657284
Number of extensions: 12616142
Number of successful extensions: 35284
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35277
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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