Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0941
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.48 
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   7.9  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 627 ILDKFMKHFLFRKLKWNFRYCFKQYCEFYQVFFKISSL 514
           + +  +K  + + +K + R+CFKQ  E+Y ++ K   L
Sbjct: 527 VYETALKLPVIKYVKGDNRFCFKQLLEYYDIYLKFKLL 564


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = +2

Query: 11  YLRNILPVEVLNSVTGAPRYC----HKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNT 178
           Y  + LP+  ++  T A R      ++ + + G V    L++  N       V  LAS  
Sbjct: 509 YDADCLPMTFIHIATSAARIILVKLNENIPEDGDVCNIYLEIITNALDVCANVWPLASQA 568

Query: 179 AIADSAKVKSCAVCNKDN 232
           + A     KSCA   K+N
Sbjct: 569 SRAILNAYKSCATSPKEN 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,350
Number of Sequences: 5004
Number of extensions: 56132
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)