Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0941
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671...    33   0.22 
01_05_0397 + 21753095-21753814                                         29   2.6  
06_01_0333 + 2404459-2404857,2404917-2405009,2405428-2405522,240...    29   4.6  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    28   6.1  
11_01_0438 - 3349506-3351239                                           28   8.1  

>02_05_0371 +
           28364896-28366182,28366510-28366623,28366861-28367125,
           28367981-28368105
          Length = 596

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = -3

Query: 199 LRAVSDRGVGGELDNSAGVLGIVGV-DIQASTDNSSALHDDLVTVSR 62
           +R + D GVG E++   G   I+G+  +Q STD+S+++ +++  + R
Sbjct: 390 MRRMEDVGVGLEIETRPGGCAIIGLKPLQLSTDHSTSIEEEVHRIKR 436


>01_05_0397 + 21753095-21753814
          Length = 239

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 116 LDVNPNDSQHTCRVVELASNTAIADSAKVKSCAVCNK 226
           +D N + ++H    +++  +TA +DS  V SC VC +
Sbjct: 8   VDTNWSAAEHDHIAIDIGDSTAGSDSDDVPSCVVCTE 44


>06_01_0333 +
           2404459-2404857,2404917-2405009,2405428-2405522,
           2406146-2406219,2406307-2406395,2406745-2406858
          Length = 287

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 382 LGVPNSVLSAPNLVLTEKNSKEFIVNLSSFSYICPHL 492
           L V N +L+    +       EF V +S+F+YI PHL
Sbjct: 220 LSVQNRLLNIDENIYIPITKGEFAVIVSTFNYIIPHL 256


>02_03_0390 +
           18448671-18448889,18449567-18449632,18449702-18449761,
           18449864-18449959,18452287-18452447,18452669-18452790,
           18452872-18453239,18453653-18453739,18453835-18453969,
           18454349-18454471,18454771-18454854,18455023-18455187,
           18455310-18455486,18455660-18455773,18455912-18456016,
           18457056-18457174,18457244-18457385,18457461-18457555,
           18457757-18457862,18458125-18458204,18458285-18458461,
           18459828-18459912,18460024-18460104,18460208-18460351,
           18460468-18460563,18460654-18460854,18461462-18461895,
           18462417-18462478,18462622-18462872,18462956-18463030,
           18463110-18463300,18463696-18463867,18463956-18464020,
           18464646-18464778,18464861-18464962,18465047-18465130,
           18465656-18465730,18465818-18465877,18465967-18466223,
           18466560-18466608,18466781-18466941,18467013-18467079,
           18467174-18467299,18467422-18467592,18468566-18468769,
           18469059-18469165,18469608-18469737,18469774-18469959,
           18470704-18470742
          Length = 2202

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 567 SNENSILIYEIKNVS*IYPIYQINLKKLLTVFFGYV 674
           +N NSI I E +++  +Y   Q+  K +L  F+GYV
Sbjct: 837 ANGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYV 872


>11_01_0438 - 3349506-3351239
          Length = 577

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 56  GAPRYCHKIVMKSGTVV---RTCLDVNPNDSQHTCRVVELASNTAIAD 190
           GAPR  +++ +++GT     RTC  + P D+     + E+    A+ D
Sbjct: 308 GAPRGAYRLALRNGTFAPADRTCGRIAPTDANPVWAMEEMPLPRAMGD 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,611,228
Number of Sequences: 37544
Number of extensions: 316046
Number of successful extensions: 887
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)