Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0941
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    30   1.8  
AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine re...    29   4.2  
AF098985-2|AAC67420.3|  166|Caenorhabditis elegans Hypothetical ...    28   7.3  
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr...    27   9.6  
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr...    27   9.6  
L14433-5|AAA27976.2|  202|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical
           protein F56E10.3 protein.
          Length = 475

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 615 FMKHFLFRKLKWNFRYCFKQYCEFYQVFFKISSLMK 508
           F+K  +F  L WN  Y FK +  F+ +  ++ + +K
Sbjct: 7   FLKLAIFETLFWNLSYIFKHFQNFFGILTQLLATVK 42


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 107 RTCLDVNPNDSQHTCRVVELASNTAIA 187
           R C+ +N ND Q +CR V+L     IA
Sbjct: 221 RCCVKLNKNDKQTSCRTVDLQKQLMIA 247


>AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine
           receptor, class h protein23 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 247 IYFFSLPLATFALIATYFVFKQ*FRFYIYFLL 342
           I+F SLP    AL + +F+  + F  Y YFLL
Sbjct: 18  IHFVSLPTYFLALFSLFFIKSKVFVTYRYFLL 49


>AF098985-2|AAC67420.3|  166|Caenorhabditis elegans Hypothetical
           protein C08G5.2 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 566 VSNNTANSTRFFLKSVL**KHFRSCRWGQ-MYENELRFTINSLEFFSVSTRLGAERTLFG 390
           V  N + +TRF L S+            Q M   +L   +N++    V  +LGAE  L G
Sbjct: 14  VLKNLSANTRFDLISIC--PSLEKVEKAQTMIIKDLDLNLNTITVDGVEYQLGAENNLNG 71

Query: 389 TPK 381
           TPK
Sbjct: 72  TPK 74


>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
           protein ZK688.5b protein.
          Length = 1595

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 476 YENELRFTINSLEFFSVSTRLG 411
           +E  +R TIN++ F S STRLG
Sbjct: 229 FEQVVRETINNISFLSDSTRLG 250


>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
           protein ZK688.5a protein.
          Length = 1620

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 476 YENELRFTINSLEFFSVSTRLG 411
           +E  +R TIN++ F S STRLG
Sbjct: 229 FEQVVRETINNISFLSDSTRLG 250


>L14433-5|AAA27976.2|  202|Caenorhabditis elegans Hypothetical
           protein C50C3.5 protein.
          Length = 202

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 617 LSNIPNKPKKVVNSFFWLCK 676
           LS I N P+KVV+   W CK
Sbjct: 129 LSKIDNNPEKVVSWGMWFCK 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,359,861
Number of Sequences: 27780
Number of extensions: 317588
Number of successful extensions: 815
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)