Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0941
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04545.1 68417.m00665 Ulp1 protease family protein contains P...    30   1.7  
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro...    29   2.9  
At5g48350.1 68418.m05974 hypothetical protein                          29   3.9  
At4g38350.1 68417.m05422 patched family protein similar to SP|O1...    28   5.1  
At1g71260.1 68414.m08224 expressed protein                             28   5.1  
At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    27   8.9  
At1g79610.1 68414.m09282 sodium proton exchanger, putative (NHX6...    27   8.9  

>At4g04545.1 68417.m00665 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 882

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -3

Query: 178 GVGGELDNSAGVLGIV---GVDIQASTDNSSALHDDLVTVSRSSRNAVQDFDRQNVAQVE 8
           G+ G  D+ AGV GI+   GV     TD    +  D  +  R  + +  D D Q+   ++
Sbjct: 442 GLAGGSDSVAGVCGIIGGLGVLDGIKTDTLKEVRGDDASQKRRKKKSSSDMDAQSTRPLK 501

Query: 7   RI 2
           R+
Sbjct: 502 RV 503


>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
           protein similar to SP|P40618 High mobility group protein
           HMG2A {Gallus gallus}; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 446

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 593 RNKKCFINLSNIPNKPKKVVNSFFWLCK 676
           +NKK   N+   PNKPKK  +S+F  CK
Sbjct: 359 KNKKKNENVD--PNKPKKPTSSYFLFCK 384


>At5g48350.1 68418.m05974 hypothetical protein
          Length = 199

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -1

Query: 285 QSECGQWEREEIDPAPLQLSLLHTAQDLTFALSAIAVLEASSTTRQVCWESLGLTSKQVR 106
           +SE G   +  ++  P   +L +   D+ F +SAI   E  S      WE   L   Q++
Sbjct: 117 ESEFGLTCKNVVEIGPATWNLTNMTTDVKFRISAIVSTERPSNAVLEDWEKFVLNKNQIK 176


>At4g38350.1 68417.m05422 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (PID:g2276463); contains Pfam profile PF02460
           Patched family
          Length = 1064

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 456 ESQFIFIHLSPSTRTKMFSLKN*F*KKPGRIRSIV*NSNENSILIYEIK 602
           E +F   HLSP  R +   L      K GR  SIV  ++EN +L+++I+
Sbjct: 348 EKKFFDTHLSPFYRIEQLILATVPDPKSGRAPSIV--TDENILLLFDIQ 394


>At1g71260.1 68414.m08224 expressed protein
          Length = 238

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 376 VGLGVPNSVLSAPNLVLTEKNSKEFIVNLSSFSYICPHL 492
           + L V NS+L   +  +      EF V  ++FS+  PH+
Sbjct: 165 ISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHI 203


>At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 534

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 17  RNILPVEVLNSVTGAPRYCHKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNTAIADSA 196
           R+ L   V   +    R C K  +      +T L   P+   H CRV+E+A+ + + + A
Sbjct: 64  RSTLTSPVFLQILRETRKCPKTTLDFFDFAKTHLRFEPDLKSH-CRVIEVAAESGLLERA 122

Query: 197 KV 202
           ++
Sbjct: 123 EM 124


>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 315 LLFENEIRSDQSECGQWEREEIDP 244
           LL E E RS++S C + ERE  DP
Sbjct: 180 LLLEVEPRSEKSSCNEIEREVGDP 203


>At1g79610.1 68414.m09282 sodium proton exchanger, putative (NHX6)
           identical to Na+/H+ exchanger 6 [Arabidopsis thaliana]
           gi|19919848|gb|AAM08407 (Plant J. (2002) In press);
           contains similarity to Na+/H+ antiporter GI:1655701 from
           [Xenopus laevis]; contains non-consensus AT/AC splice
           sites; Member of The Monovalent Cation:Proton Antiporter
           (CPA1) Family, PMID:11500563
          Length = 535

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 612 MKHFLFRKLKWNFRYCFKQYCEFYQVFFK-ISSLMKTFSFV*MGTDV 475
           MKH+ +  L  N +        F   FF  ISSL +TF F+ MG D+
Sbjct: 292 MKHYTYSNLSANSQ-------RFVSAFFHLISSLAETFVFIYMGFDI 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,947,421
Number of Sequences: 28952
Number of extensions: 273297
Number of successful extensions: 745
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)