Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0940
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    52   6e-08
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    47   3e-06

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
 Frame = +1

Query: 253 PADSFFNFFNPPTLP-EDPNSTVASDVQALLTADFEIGHYIRERVVSRAV 399
           P DSFFNFFNPPT P E+   + + ++  LL  D++IG   +E+++ RAV
Sbjct: 282 PRDSFFNFFNPPTPPSEEDEESESPELDELLELDYQIGEDFKEKLIPRAV 331



 Score = 33.9 bits (74), Expect = 0.022
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 11  FTLEFYFAPNEYFTNTVLTKEY 76
           F LEF FA N +FTN +LTK Y
Sbjct: 206 FKLEFEFAENPFFTNKILTKTY 227


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 253 PADSFFNFFNPPTLPEDPNSTVASDVQALLTADFEIGHYIRERVVSRAV 399
           P DSFFNFF+PP L +D +     D   LL  D+++G   +++++  A+
Sbjct: 287 PNDSFFNFFSPPQLDDDESDDGLDDKTELLELDYQLGEVFKDQIIPLAI 335



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 11  FTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS-CKGCEINW 163
           + LEF F  N+YFTN +LTK Y  K   D+ SP    G  +Y   +G +INW
Sbjct: 210 YKLEFEFDSNDYFTNKILTKTYYYK---DDLSP---SGEFLYDHAEGDKINW 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,032
Number of Sequences: 5004
Number of extensions: 41040
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)