Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0940
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 46 4e-05
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 44 9e-05
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 42 4e-04
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 42 5e-04
05_03_0077 + 8200529-8200541,8200658-8200701,8200793-8200888,820... 31 1.2
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 28 8.1
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 8.1
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 259 DSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRAV 399
+SFFNFF+PP +P ED + A ++Q + D++IG IR++++ AV
Sbjct: 250 ESFFNFFSPPQVPDDDEDIDEDTADELQGQMEHDYDIGTTIRDKIIPHAV 299
Score = 35.5 bits (78), Expect = 0.041
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +2
Query: 11 FTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAG 172
F L+F+F N +F N+VLTK Y M DE+ P+ + G EI W G
Sbjct: 177 FKLDFFFDTNPFFKNSVLTKTYHM---VDEDEPI------LEKAIGTEIEWYPG 221
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = +1
Query: 259 DSFFNFFNPPTLPEDP---NSTVASDVQALLTADFEIGHYIRERVVSRAV 399
+SFFNFF+PP +P+D + A +Q + D++IG IR++++ AV
Sbjct: 247 ESFFNFFSPPQVPDDDEEIDEDTAEQLQNQMEQDYDIGSTIRDKIIPHAV 296
Score = 37.5 bits (83), Expect = 0.010
Identities = 23/54 (42%), Positives = 28/54 (51%)
Frame = +2
Query: 11 FTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAG 172
F LEFYF N +F N+VLTK Y M DE+ P+ + G EI W G
Sbjct: 174 FKLEFYFDTNPFFKNSVLTKTYHM---IDEDEPI------LEKAIGTEIEWFPG 218
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = +1
Query: 259 DSFFNFFNPPTLPEDP---NSTVASDVQALLTADFEIGHYIRERVVSRAV 399
+SFFNFF+PP +P+D + A ++Q + D++I +R++++ AV
Sbjct: 324 ESFFNFFSPPQVPDDDAKIDENTAEELQNQMERDYDIASTLRDKIIPHAV 373
Score = 35.5 bits (78), Expect = 0.041
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +2
Query: 11 FTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAG 172
F EF+F N +F N VLTK Y M + DE P + G EI W+ G
Sbjct: 253 FKFEFFFYTNPFFKNQVLTKTYHMIDEDDE--------PILEKAIGTEIEWHPG 298
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +1
Query: 259 DSFFNFFNPPTLPEDP---NSTVASDVQALLTADFEIGHYIRERVVSRAV 399
+SFFNFF+PP +PED + A ++Q + D++I +R++++ V
Sbjct: 219 ESFFNFFSPPQVPEDDAKIDENTAEELQNQMERDYDIASTLRDKIIPHVV 268
Score = 35.5 bits (78), Expect = 0.041
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +2
Query: 11 FTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAG 172
F EF+F N +F N VLTK Y M + DE P + G EI W+ G
Sbjct: 148 FKFEFFFDTNPFFKNQVLTKTYHMIDEDDE--------PILEKAIGTEIEWHPG 193
>05_03_0077 +
8200529-8200541,8200658-8200701,8200793-8200888,
8201585-8201639,8201753-8201817,8202309-8202434,
8202742-8202903
Length = 186
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 259 DSFFNFFNPPTLPED 303
+SFFNFF+PP +P+D
Sbjct: 111 ESFFNFFSPPQVPDD 125
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 5 TSFTLEFYFAPNEYFTNTVLTKEY 76
+ +++ F+PN YF +T LTK Y
Sbjct: 117 SGYSITLTFSPNPYFEDTKLTKTY 140
>03_02_0740 - 10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 288 WWVKEIEEGVSWTDLVTVRTDPRDLCF 208
WW E+EEG SW + P+ L F
Sbjct: 1172 WWRNELEEGGSWWEGRVSAVKPKSLDF 1198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,049,120
Number of Sequences: 37544
Number of extensions: 266718
Number of successful extensions: 688
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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