Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0940
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   4e-14
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    30   2.1  
SB_41562| Best HMM Match : DUF131 (HMM E-Value=2.7)                    28   8.3  
SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)               28   8.3  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 31/46 (67%), Positives = 35/46 (76%)
 Frame = +2

Query: 11  FTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKG 148
           F LEF+F PN +FTNTVLTK Y MKC+PDE+ P  FEGPEI S  G
Sbjct: 295 FVLEFHFTPNPFFTNTVLTKSYKMKCEPDEDDPFSFEGPEIVSTSG 340


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -2

Query: 254  GRT**QCELTHGTCASVSSLWS*QLRFYQHSSLFHIPCKN 135
            G T  QCELT G CA  S+  + +L     SSL    CKN
Sbjct: 2616 GSTGKQCELTEGACAK-SNCTADELCVLSESSLTGYECKN 2654


>SB_41562| Best HMM Match : DUF131 (HMM E-Value=2.7)
          Length = 332

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 268 FNFFNPPTLP--EDPNSTVASDVQALL 342
           FN+F PP LP  +   +T++++VQ L+
Sbjct: 152 FNYFKPPELPTFDSKTNTISTEVQNLM 178


>SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
          Length = 291

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 528 PP--SLL*ASEAFVRLDRLYLLQQIT*GPLNKRTRHR 632
           PP  S+L   +  V LD++YLL + T  PLNK T +R
Sbjct: 142 PPLTSVLTTGKDDVPLDQVYLLPEKTISPLNKCTYYR 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,462,020
Number of Sequences: 59808
Number of extensions: 311805
Number of successful extensions: 791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)