Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0940
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    64   1e-10
Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical pr...    35   0.064
Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical pr...    35   0.064
AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of...    35   0.064
U46673-1|AAC48153.4| 1003|Caenorhabditis elegans Insulin recepto...    28   5.5  
U29154-4|AAA68420.2|  288|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 27/54 (50%), Positives = 34/54 (62%)
 Frame = +2

Query: 11  FTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAG 172
           F +EF+FA N YF N VLTK YL+   PD E+PL+F+GP +    G  I W  G
Sbjct: 156 FKIEFHFATNPYFKNQVLTKTYLLGFDPDAEAPLQFDGPHVIRAVGDTIEWEDG 209



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 256 ADSFFNFFNPPTLPEDPNSTVASD-VQALLTADFEIGHYIRERVVSRAV 399
           ADSFFNFF PP   ++ N     +  +  L  D+E+G  IR+ ++ RAV
Sbjct: 237 ADSFFNFFEPPKSKDERNEDEDDEQAEEFLELDYEMGQAIRDTIIPRAV 285


>Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical
           protein C27B7.1b protein.
          Length = 313

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 5   TSFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPE 130
           + F +   F PNEYFTN V+TK Y ++ +       E E  E
Sbjct: 119 SGFKIIMTFDPNEYFTNEVITKSYHLQSESPSTEITEIEWKE 160


>Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical
           protein C27B7.1a protein.
          Length = 312

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 5   TSFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPE 130
           + F +   F PNEYFTN V+TK Y ++ +       E E  E
Sbjct: 119 SGFKIIMTFDPNEYFTNEVITKSYHLQSESPSTEITEIEWKE 160


>AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of
           presenilin 2 protein.
          Length = 312

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 5   TSFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPE 130
           + F +   F PNEYFTN V+TK Y ++ +       E E  E
Sbjct: 119 SGFKIIMTFDPNEYFTNEVITKSYHLQSESPSTEITEIEWKE 160


>U46673-1|AAC48153.4| 1003|Caenorhabditis elegans Insulin receptor
           substrate homologprotein 1 protein.
          Length = 1003

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 92  PDEESPLEFEGPEIYSCKGCEINW 163
           P +E P EF  PE+Y C  C + +
Sbjct: 95  PKDEDPDEFGIPEVYKCGNCLVGF 118


>U29154-4|AAA68420.2|  288|Caenorhabditis elegans Hypothetical
           protein T07F12.4 protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 256 ADSFFNFFNPPTLPEDPNSTVASDVQALLTAD 351
           A + F+ ++PP LP++ +  V+  +Q+LL  D
Sbjct: 235 AGANFDAYDPPELPDELSQEVSGIIQSLLQLD 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,845,429
Number of Sequences: 27780
Number of extensions: 232648
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)