Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0940
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    52   5e-07
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    50   1e-06
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    48   4e-06
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    39   0.004

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
 Frame = +1

Query: 259 DSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRAV 399
           +SFFNFF+PP +P   ED +   A D+Q L+  D++IG  IRE+++ RAV
Sbjct: 243 ESFFNFFSPPEVPDEDEDIDEERAEDLQNLMEQDYDIGSTIREKIIPRAV 292



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 25/54 (46%), Positives = 29/54 (53%)
 Frame = +2

Query: 11  FTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAG 172
           F LEF+F  N YF NTVLTK Y M    DE+ PL      +    G EI+W  G
Sbjct: 170 FKLEFFFDTNPYFKNTVLTKSYHM---IDEDEPL------LEKAMGTEIDWYPG 214


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
 Frame = +1

Query: 259 DSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRAV 399
           +SFFNFFNPP +P   ED +   A ++Q L+  D++IG  IRE+++  AV
Sbjct: 242 ESFFNFFNPPQVPDDDEDIDEERAEELQNLMEQDYDIGSTIREKIIPHAV 291



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 24/54 (44%), Positives = 29/54 (53%)
 Frame = +2

Query: 11  FTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAG 172
           F LEF+F  N YF NT+LTK Y M    DE+ PL      +    G EI+W  G
Sbjct: 169 FKLEFFFDQNPYFKNTLLTKAYHM---IDEDEPL------LEKAIGTEIDWYPG 213


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 21/50 (42%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
 Frame = +1

Query: 259 DSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRAV 399
           +SFFNFF+PP +P   ED +  +A ++Q  +  D++IG  I+E+++S AV
Sbjct: 242 ESFFNFFSPPQVPDDDEDLDDDMADELQGQMEHDYDIGSTIKEKIISHAV 291



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 24/54 (44%), Positives = 28/54 (51%)
 Frame = +2

Query: 11  FTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAG 172
           F LEF+F  N YF NTVLTK Y M    DE+ P+      +    G EI W  G
Sbjct: 169 FKLEFFFDQNPYFKNTVLTKTYHM---IDEDEPI------LEKALGTEIEWYPG 213


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
 Frame = +1

Query: 259 DSFFNFFNPPTLPE--------DPNSTVASDVQALLTADFEIGHYIRERVVSRAV 399
           +SFFNFF PP +PE        D ++ +  ++Q L+  D++I   IR++++  AV
Sbjct: 248 ESFFNFFKPPEIPEIDEVDDYDDFDTIMTEELQNLMDQDYDIAVTIRDKLIPHAV 302



 Score = 32.7 bits (71), Expect = 0.24
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +2

Query: 8   SFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAG 172
           +F LEF F  N YF N+VL+K Y +    DE      +GP +    G +I W  G
Sbjct: 171 NFKLEFLFDSNLYFKNSVLSKTYHVN---DE------DGPVLEKVIGTDIEWFPG 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,073,797
Number of Sequences: 28952
Number of extensions: 216835
Number of successful extensions: 553
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)