Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0939
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.2  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.2  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    21   7.2  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    21   7.2  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = +2

Query: 221  DGALDDLTKLR----GSSITVEPVPLPATCKP---YSNGPG 322
            DG + D   L+    GSS + E VPL  T  P    S+GPG
Sbjct: 1081 DGVIPDPVALKSAQQGSSSSSEGVPLKGTAVPPPSGSSGPG 1121



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 253 RFIDNGGAGSTASNMQALQQRTWL 324
           R + N   G++ASN  +  Q  WL
Sbjct: 344 RTMANAAPGNSASNRHSAWQSHWL 367


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -2

Query: 417 GVQVQRLIQEHFDDQITSFDMIEEH 343
           G +V+  +  + DD + + + + EH
Sbjct: 447 GTEVREFVVNYIDDLLVASETLNEH 471


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 459 CSNHKQVSQKCLEGPC 506
           C N K  S  C+E PC
Sbjct: 315 CFNAKPWSNYCVEPPC 330



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 57  SIACIVWPNIAMNVEIMWSQ 116
           S+   +WP  A   E++WS+
Sbjct: 530 SVDTRLWPRAAALGEVLWSE 549


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 654 RRLRKSQSKVQLGIDSIFDG 595
           +R   S ++  + IDS+FDG
Sbjct: 99  KRTLSSATQASIEIDSLFDG 118


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 654 RRLRKSQSKVQLGIDSIFDG 595
           +R   S ++  + IDS+FDG
Sbjct: 99  KRTLSSATQASIEIDSLFDG 118


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,013
Number of Sequences: 336
Number of extensions: 4079
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)