Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0939
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    81   1e-16
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    33   0.052
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe...    27   3.4  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   3.4  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   4.5  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    26   4.5  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   5.9  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   7.9  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.9  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 34/62 (54%), Positives = 43/62 (69%)
 Frame = +1

Query: 304 LQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVIINRSR 483
           L+ RTWL+HWSLF  FNH  G D + ++F Y P YLN IQT CP +LRYL  AV+ N++ 
Sbjct: 220 LRNRTWLLHWSLFPLFNHANGCDTLCDLFFYTP-YLNTIQTSCPWLLRYLTVAVVTNQNN 278

Query: 484 RN 489
            N
Sbjct: 279 AN 280



 Score = 65.3 bits (152), Expect = 8e-12
 Identities = 32/82 (39%), Positives = 47/82 (57%)
 Frame = +2

Query: 8   INHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWG 187
           + HL   + Y    E I  +Y+ A+++Y CGNY  ++  LY  +      + N  S  WG
Sbjct: 127 LQHLQ--EHYNITPERIAVLYKFAQFQYNCGNYGGASDLLYHFRAFSKDPELN-ASATWG 183

Query: 188 KLASEILVQNWDGALDDLTKLR 253
           K ASEIL  +WDGA+++L KLR
Sbjct: 184 KFASEILTVDWDGAMEELGKLR 205



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 27/63 (42%), Positives = 37/63 (58%)
 Frame = +3

Query: 465 NHKQVSQKCLEGPCEVIQQEAYTYRDPITEFIEHLYVNFDFEAGRRKLNQCQAVLLTDFF 644
           N +Q  Q+ +     +I QE Y Y DP+T FI  LY   DFE  +  L +C+ VL TDFF
Sbjct: 285 NPRQSYQRRMRDLVRIISQENYEYSDPVTSFISALYTEVDFEKAQHCLRECEEVLKTDFF 344

Query: 645 LIA 653
           L++
Sbjct: 345 LVS 347


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -1

Query: 172 QIILVSWRHHQLTKVKI*C*LHIISTFIAIFGQTIHAIDHFNFKL 38
           Q++ V W+HHQ       C   I + F  IFGQ I AID ++ KL
Sbjct: 332 QLLEVPWQHHQ-------CHPLIKTHFFGIFGQKIDAIDFYSAKL 369


>SPAC869.06c |||cation binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 227 RHPNFVPKFR*PIYP-KEPTNNSCQLATSPVDKSKDMM 117
           R   FVP    P  P K P      L  +P+DK +DMM
Sbjct: 162 RTKKFVPTHSHPSAPNKPPFETVAGLFAAPIDKLRDMM 199


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 158 DKNYLSVLWGKLASEILVQNWDGALDDLTKLRGSSITVEPVPLPATCKPYSNG-PGWFTG 334
           +K++  +    L +EIL +   G  +      G  +T EP+P+  T      G P  FTG
Sbjct: 353 EKDHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTG 412


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 468 HKQVSQKCLEGPCEVIQQEAYTYRDPITEFIEHLYVN 578
           H+Q+S   L G    I ++ Y Y DP+     H+  N
Sbjct: 154 HRQLSSLILRG----IMEDLYQYDDPVASLRSHILFN 186


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = +1

Query: 334 SLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVIINRSRRNALKDLVKL 513
           S ++ F+    +D I  +    PL L  I  + P    +   A ++  ++ +    L+  
Sbjct: 290 SRYLSFHQNITKDSISRLLNGLPLNLVKILGLKPDTSSFEKCAELMLTNQISTRSLLISK 349

Query: 514 FNKKLTPIEILSQSSLNIFT 573
             KKLT   IL+QS   IFT
Sbjct: 350 SIKKLTSFSILTQSIKGIFT 369


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 161 CQLATSPVDKSKDMMLTPHNFHIHSDIW 78
           C++    V KS D+ +  H F ++SD W
Sbjct: 506 CRMEHPNVVKSYDLCIDSHIFPLYSDTW 533


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 212 QNWDGALDDLTKLRGSSITVEPVPLPATCKPYSN 313
           Q+   A  D ++  GS+  V P P P+T  P +N
Sbjct: 150 QSKHNAFYDASQTFGSTAKVAPAPAPSTKTPLAN 183


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +2

Query: 5   LINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNY 106
           ++ HL+     +F +   ++M++ ++YRY   N+
Sbjct: 190 MVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,573
Number of Sequences: 5004
Number of extensions: 66402
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)