Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0939
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 103 1e-22
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 102 2e-22
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 64 1e-10
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092... 30 1.5
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 29 2.6
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869... 29 3.5
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177... 29 4.6
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 28 6.1
07_01_0658 + 4923205-4923334,4923448-4923526,4923629-4923723,492... 28 8.1
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 103 bits (248), Expect = 1e-22
Identities = 44/80 (55%), Positives = 63/80 (78%)
Frame = +1
Query: 286 ASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAV 465
+S + LQ R WL+HWS+F+FFNH GR+ II++F ++ YLNAIQT PH+LRYLATAV
Sbjct: 200 SSPLNQLQNRIWLMHWSIFIFFNHENGRNGIIDLF-FQDRYLNAIQTNAPHLLRYLATAV 258
Query: 466 IINRSRRNALKDLVKLFNKK 525
++N+ RRN LK+L+K+ ++
Sbjct: 259 VVNKRRRNMLKELIKVIQQE 278
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/68 (48%), Positives = 55/68 (80%)
Frame = +2
Query: 50 EMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDGA 229
E I+++Y+ AK++++CGNY ++A YLY + + + ++++ LS LWGKLA+EIL+QNWD A
Sbjct: 125 EQIETLYQFAKFQFDCGNYSDAAVYLYQYRALCTNSERS-LSALWGKLAAEILMQNWDVA 183
Query: 230 LDDLTKLR 253
LD+L +L+
Sbjct: 184 LDELNRLK 191
Score = 68.1 bits (159), Expect = 6e-12
Identities = 37/93 (39%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Frame = +3
Query: 381 RNVPV*AFVLERHPDDVSPHPP-LLGYCSNHKQVSQK---CLEGPCEVIQQEAYTYRDPI 548
RN + F +R+ + + + P LL Y + V+++ L+ +VIQQE ++Y+DPI
Sbjct: 227 RNGIIDLFFQDRYLNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQEQHSYKDPI 286
Query: 549 TEFIEHLYVNFDFEAGRRKLNQCQAVLLTDFFL 647
TEF+E LYVN+DF+ ++KL +C+ V+L D FL
Sbjct: 287 TEFLECLYVNYDFDGAQQKLIECEQVILNDPFL 319
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 102 bits (245), Expect = 2e-22
Identities = 43/80 (53%), Positives = 63/80 (78%)
Frame = +1
Query: 286 ASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAV 465
+S + LQ R WL+HWS+F+F+NH GR+ II++F ++ YLNAIQT PH+LRYLATAV
Sbjct: 176 SSPLNQLQNRIWLMHWSIFIFYNHENGRNGIIDLF-FQERYLNAIQTNAPHLLRYLATAV 234
Query: 466 IINRSRRNALKDLVKLFNKK 525
++N+ RRN LK+L+K+ ++
Sbjct: 235 VVNKRRRNMLKELIKVIQQE 254
Score = 72.5 bits (170), Expect = 3e-13
Identities = 30/68 (44%), Positives = 53/68 (77%)
Frame = +2
Query: 50 EMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDGA 229
+ I+++Y+ AK++++CGNY +A YL+ + + + +++ LS LWGKLA+EIL+QNWD A
Sbjct: 101 DQIETLYQYAKFQFDCGNYSFAAQYLHQYRALCTNIERS-LSALWGKLAAEILMQNWDVA 159
Query: 230 LDDLTKLR 253
L++L +L+
Sbjct: 160 LEELNRLK 167
Score = 67.7 bits (158), Expect = 8e-12
Identities = 37/93 (39%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Frame = +3
Query: 381 RNVPV*AFVLERHPDDVSPHPP-LLGYCSNHKQVSQK---CLEGPCEVIQQEAYTYRDPI 548
RN + F ER+ + + + P LL Y + V+++ L+ +VIQQE ++Y+DPI
Sbjct: 203 RNGIIDLFFQERYLNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQEQHSYKDPI 262
Query: 549 TEFIEHLYVNFDFEAGRRKLNQCQAVLLTDFFL 647
TEF+E L+VN+DF+ ++KL +C+ V+L D FL
Sbjct: 263 TEFLECLFVNYDFDGAQQKLIECEEVILNDPFL 295
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/76 (34%), Positives = 54/76 (71%)
Frame = +2
Query: 26 NKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEI 205
++ ++ + I+++Y+ AK++++CGNY ++A L+ + + + ++++ LS WGKL++EI
Sbjct: 122 HERFQIGPDQIEALYQYAKFQFDCGNYPDAAENLHRYRALCTSSERS-LSAQWGKLSAEI 180
Query: 206 LVQNWDGALDDLTKLR 253
L NWD AL++L L+
Sbjct: 181 LNNNWDVALEELNCLK 196
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/47 (57%), Positives = 38/47 (80%)
Frame = +3
Query: 507 EVIQQEAYTYRDPITEFIEHLYVNFDFEAGRRKLNQCQAVLLTDFFL 647
+VIQQE ++Y+DPITEF+E LYVN DF+ ++KL +C+ V+L D FL
Sbjct: 264 KVIQQEQHSYKDPITEFLECLYVNHDFDGAQQKLIECEQVILNDPFL 310
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = +1
Query: 406 YLNAIQTMCPHILRYLATAVIINRSRRNALKDLVKLFNKK 525
YLNAIQT PH+LRYLA A+++NR RRN LK+LVK+ ++
Sbjct: 230 YLNAIQTDAPHLLRYLAAAIVVNRRRRNMLKELVKVIQQE 269
>01_03_0010 - 11608537-11608786,11608816-11608940,11609152-11609217,
11609741-11609872,11610507-11610608,11610743-11610940,
11611015-11611161,11611321-11611431,11613241-11613780,
11613847-11614003,11614148-11614297,11614375-11614514,
11615346-11615468,11615561-11615677,11617184-11617357,
11617768-11617909,11618076-11618194,11619773-11619955
Length = 991
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -3
Query: 266 LSMNLEVWLDHRARHPNFVPKFR*PIYPKEPTNNSCQLATSPVDKS--KDMMLTPHNFHI 93
LS+ L +W +H HP V + P+ + T N+ + T+ + +++ N HI
Sbjct: 828 LSLRLSLWAEHLGLHPGEVSQIMDPV--DDLTYNNIWMGTAKANTKIYQNVFSCVPNDHI 885
Query: 92 HSDIWPNDTCYRSFQF 45
HS N+ R F
Sbjct: 886 HSRYGTNNLFSRLLAF 901
>05_04_0209 - 19073147-19074041,19074117-19074163,19074258-19074437,
19074839-19074955,19075105-19075227,19075391-19075776,
19076177-19076303,19077140-19077202,19078035-19078086,
19078189-19080023
Length = 1274
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 212 QNWDGALDDLTKLRGSSITVEPVPLPATCKPYSNGPGWFTGRYSCSS 352
+NW A D +T+ + + E +PLP++ S P F +S ++
Sbjct: 1188 KNWSSASDTITQFQQRANADESLPLPSSSLASSEKPATFKSTWSSAA 1234
>01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,
8696199-8696258,8696336-8696414,8696494-8696555,
8697129-8697204,8697367-8697419,8698181-8698270,
8698411-8698458
Length = 1346
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = -3
Query: 689 SSRAFSTNSSQTGD*EKVSQKYSLALI-QFSTARFKVKINV-KMFNELCDRISIGVSFLL 516
S + ++N D EK+SQKY L + F+ + I K+ L + + VS +L
Sbjct: 1041 SDSSLTSNEQTVSDLEKISQKYFLPMYPSFAEDEDPIPIYAQKLLVMLMEHDYVKVSDIL 1100
Query: 515 NNFT--RSFKAFLRDL 474
N T R F+ L DL
Sbjct: 1101 NEATVSRCFEFLLGDL 1116
>04_04_0961 +
29715938-29716034,29716918-29717133,29717438-29717776,
29718247-29719274,29719465-29719551,29719636-29720043,
29720394-29720558,29720742-29721036,29721131-29721345,
29721838-29722143,29722474-29722537,29722644-29722883,
29722959-29723062
Length = 1187
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 134 CQLVMSPTDKNYLSVLWGKLASEILVQNWDGALDDLTKLRG 256
C + P DKN + ++GK ++E L ++ +DD+ G
Sbjct: 178 CYWIQEPLDKNDVPDVYGKDSAEFLSDSFKKIIDDVENRHG 218
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 391 LYKPLYLNAIQ--TMCPHILRYLATAVIINRSRRNALKDLVKLFNKKLTPIEILSQSSLN 564
++ P +L+ + ++C ++L +A+ V+ NR + L D+V F P +++ SSL
Sbjct: 178 VHNPEHLSKFRPISLC-NVLYKIASKVLANRLKL-FLPDIVSEFQSAFVPGRLITDSSLV 235
Query: 565 IFTLILTLKR 594
+ + T+K+
Sbjct: 236 AYECLNTIKK 245
>07_01_0658 +
4923205-4923334,4923448-4923526,4923629-4923723,
4923802-4923851,4924216-4924340,4924703-4924769,
4924871-4924960,4925281-4925392,4925597-4925667
Length = 272
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 185 GKLASEILVQNWDGALDDLTKLRGSSITVEPVPLPATCKPYSNGPGWFTG 334
G + IL + W G T L G I+V P + A Y+ P F G
Sbjct: 121 GIIDQPILRERWVGVDGMKTTLNGQEISVRPCNVLAQAYLYTTSPHLFAG 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,623,581
Number of Sequences: 37544
Number of extensions: 430302
Number of successful extensions: 1163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -