Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0939
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3) 132 3e-31
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3) 90 2e-18
SB_11787| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 4e-11
SB_33358| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_32313| Best HMM Match : RnaseH (HMM E-Value=2.5) 33 0.17
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 33 0.22
SB_12578| Best HMM Match : DUF488 (HMM E-Value=9.4) 33 0.29
SB_38423| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27) 31 1.2
SB_15450| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 31 1.2
SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27) 31 1.2
SB_56562| Best HMM Match : Lipase_GDSL (HMM E-Value=0.25) 30 1.5
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13) 30 2.0
SB_41565| Best HMM Match : Tet_res_leader (HMM E-Value=7.5) 29 2.7
SB_15572| Best HMM Match : Planc_extracel (HMM E-Value=9.3) 29 2.7
SB_26058| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32) 28 6.2
SB_11840| Best HMM Match : DUF858 (HMM E-Value=8.1e-15) 28 8.3
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)
Length = 399
Score = 132 bits (318), Expect = 3e-31
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = +1
Query: 274 AGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYL 453
+ ++A +Q LQ+RTWL+HWSLFVFFNH KGRDLII++ LY+P YLNAIQTMCPHILRYL
Sbjct: 135 SNTSAGTLQLLQERTWLIHWSLFVFFNHPKGRDLIIDLILYQPQYLNAIQTMCPHILRYL 194
Query: 454 ATAVIINRSRRNALKDLVKLFNKK 525
TAVI N+ RR LKDLVK+ ++
Sbjct: 195 TTAVITNKRRRPVLKDLVKVIQQE 218
Score = 93.5 bits (222), Expect = 1e-19
Identities = 40/72 (55%), Positives = 54/72 (75%)
Frame = +2
Query: 38 EFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQN 217
+ K EM+D +Y+ AK++YECGNY +A YLYF + + D N L+ LWGKLASEIL+QN
Sbjct: 59 QIKPEMLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEILMQN 118
Query: 218 WDGALDDLTKLR 253
WD AL+DL +L+
Sbjct: 119 WDTALEDLNRLK 130
Score = 65.3 bits (152), Expect = 4e-11
Identities = 26/38 (68%), Positives = 34/38 (89%)
Frame = +3
Query: 507 EVIQQEAYTYRDPITEFIEHLYVNFDFEAGRRKLNQCQ 620
+VIQQE+YTYRDPITEF+E LYVNFDF+ ++KL +C+
Sbjct: 213 KVIQQESYTYRDPITEFLECLYVNFDFDGAQKKLRECE 250
>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
Length = 215
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/67 (56%), Positives = 51/67 (76%)
Frame = +2
Query: 53 MIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDGAL 232
M+D +Y+ AK++YECGNY +A YLYF + + D N L+ LWGKLASEIL+QNWD AL
Sbjct: 1 MLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEILMQNWDTAL 60
Query: 233 DDLTKLR 253
+DL +L+
Sbjct: 61 EDLNRLK 67
Score = 72.9 bits (171), Expect = 2e-13
Identities = 30/55 (54%), Positives = 42/55 (76%)
Frame = +1
Query: 238 SNQTSRFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKP 402
S+ ++ D + ++A +Q LQ+RTWL+HWSLFVFFNH KGRDLII++ LY+P
Sbjct: 160 SDNLNKLKDVIESNTSAGTLQLLQERTWLIHWSLFVFFNHPKGRDLIIDLILYQP 214
>SB_11787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 65.3 bits (152), Expect = 4e-11
Identities = 26/38 (68%), Positives = 34/38 (89%)
Frame = +3
Query: 507 EVIQQEAYTYRDPITEFIEHLYVNFDFEAGRRKLNQCQ 620
+VIQQE+YTYRDPITEF+E LYVNFDF+ ++KL +C+
Sbjct: 36 KVIQQESYTYRDPITEFLECLYVNFDFDGAQKKLRECE 73
Score = 64.5 bits (150), Expect = 8e-11
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = +1
Query: 406 YLNAIQTMCPHILRYLATAVIINRSRRNALKDLVKLFNKK 525
YLNAIQTMCPHILRYL TAVI N+ RR LKDLVK+ ++
Sbjct: 2 YLNAIQTMCPHILRYLTTAVITNKRRRPVLKDLVKVIQQE 41
>SB_33358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 64.5 bits (150), Expect = 8e-11
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = +1
Query: 406 YLNAIQTMCPHILRYLATAVIINRSRRNALKDLVKLFNKK 525
YLNAIQTMCPHILRYL TAVI N+ RR LKDLVK+ ++
Sbjct: 2 YLNAIQTMCPHILRYLTTAVITNKRRRPVLKDLVKVIQQE 41
Score = 64.5 bits (150), Expect = 8e-11
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +3
Query: 507 EVIQQEAYTYRDPITEFIEHLYVNFDFEAGRRKLNQC 617
+VIQQE+YTYRDPITEF+E LYVNFDF+ ++KL +C
Sbjct: 36 KVIQQESYTYRDPITEFLECLYVNFDFDGAQKKLREC 72
>SB_32313| Best HMM Match : RnaseH (HMM E-Value=2.5)
Length = 721
Score = 33.5 bits (73), Expect = 0.17
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +1
Query: 352 NHVKGRDLIIEMFLYKPLYLNAIQTMCPHILR---YLATAVIINR--SRRNALKDLVKLF 516
N K R+L+I Y+P +NA+Q M P I R Y V I+ S + +VK
Sbjct: 527 NPKKCRELVINFLQYQPSPVNALQLMGPVIKRVESYKIFGVHISSDLSWNKHVDYVVKKA 586
Query: 517 NKKLTPIEILSQSSLNIFTLI 579
NK+L + +L +S + + L+
Sbjct: 587 NKRLYALRLLKKSGVPVQDLV 607
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +1
Query: 352 NHVKGRDLIIEMFLYKPLYLNAIQTMCPHILR-----YLATAVIINRSRRNALKDLVKLF 516
N KGR+L+I Y+P +NA+Q M I R L + + S + +VK
Sbjct: 834 NPKKGRELVIHFLQYQPSPVNALQLMGSVIKRVESYKILGVHISSDLSWNKHVDYVVKKA 893
Query: 517 NKKLTPIEILSQSSLNIFTLI 579
NK+ + +L +S + + L+
Sbjct: 894 NKRFYALRLLKKSGIPVQDLV 914
>SB_12578| Best HMM Match : DUF488 (HMM E-Value=9.4)
Length = 249
Score = 32.7 bits (71), Expect = 0.29
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 352 NHVKGRDLIIEMFLYKPLYLNAIQTMCPHILR---YLATAVIINRSRRNALKDLVKLFNK 522
N K R+L+I Y+P +NA+Q M I R Y + + S + +VK NK
Sbjct: 49 NPKKCRELVINFLQYQPSPVNALQLMGSVIKRVESYKIVHISSDLSWNKHVDYVVKKANK 108
Query: 523 KLTPIEILSQSSLNIFTLI 579
+L + +L +S + + L+
Sbjct: 109 RLYALRLLKKSGVPVQDLV 127
>SB_38423| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
Length = 329
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +1
Query: 352 NHVKGRDLIIEMFLYKPLYLNAIQTMCPHILR-----YLATAVIINRSRRNALKDLVKLF 516
N K R+L+I Y+P +NA+Q M I R L + + S + +VK
Sbjct: 234 NPKKCRELVINFLQYQPSPVNALQLMGSVIKRVESYKILGVHISSDLSWNKHVDYVVKKA 293
Query: 517 NKKLTPIEILSQSSLNIFTLI 579
NK+L + +L +S + + L+
Sbjct: 294 NKRLYALRLLKKSGVPVQDLV 314
>SB_15450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +1
Query: 352 NHVKGRDLIIEMFLYKPLYLNAIQTMCPHILR-----YLATAVIINRSRRNALKDLVKLF 516
N K R+L+I Y+P +NA+Q M I R L + + S + +VK
Sbjct: 4 NPKKCRELVINFLQYQPSPVNALQLMGSVIKRVESYKILGVHISSDLSWNKHVDYVVKKA 63
Query: 517 NKKLTPIEILSQSSLNIFTLI 579
NK+L + +L +S + + L+
Sbjct: 64 NKRLYALRLLKKSGVPVQDLV 84
>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +1
Query: 352 NHVKGRDLIIEMFLYKPLYLNAIQTMCPHILR-----YLATAVIINRSRRNALKDLVKLF 516
N K R+L+I Y+P +NA+Q M I R L + + S + +VK
Sbjct: 859 NPKKCRELVINFLQYQPSPVNALQLMGSVIKRVESYKILGVHISSDLSWNKHVDYVVKKA 918
Query: 517 NKKLTPIEILSQSSLNIFTLI 579
NK+L + +L +S + + L+
Sbjct: 919 NKRLYALRLLKKSGVPVQDLV 939
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 456 YCSNHKQVSQKCLEGPCEVIQQEAYTYRDPITEFIEHLYVNFDFEAGRRKLNQCQAVLL 632
Y N++ +S C+ C + + T I +EH + + F+ G RKL C++ L+
Sbjct: 451 YAGNYRPISLTCI---CSKLLEHIITKN--IVSHLEHHDILYKFQHGFRKLRSCESQLI 504
>SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
Length = 710
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +1
Query: 352 NHVKGRDLIIEMFLYKPLYLNAIQTMCPHILR-----YLATAVIINRSRRNALKDLVKLF 516
N K R+L+I Y+P +NA+Q M I R L + + S + +VK
Sbjct: 561 NPKKCRELVINFLQYQPSPVNALQLMGSVIKRVESYKILGVHISSDLSWNKHVDYVVKKA 620
Query: 517 NKKLTPIEILSQSSLNIFTLI 579
NK+L + +L +S + + L+
Sbjct: 621 NKRLYALRLLKKSGVPVQDLV 641
>SB_56562| Best HMM Match : Lipase_GDSL (HMM E-Value=0.25)
Length = 473
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +1
Query: 352 NHVKGRDLIIEMFLYKPLYLNAIQTMCPHILR-----YLATAVIINRSRRNALKDLVKLF 516
N K R+L+I Y+P +NA+Q M I R L + + S + +VK
Sbjct: 391 NPKKCRELVINSLQYQPSPVNALQLMGSVIRRVGSYKILGVHISSDLSWNKHVDYVVKKA 450
Query: 517 NKKLTPIEILSQSSLNIFTLI 579
NK+L + +L +S + + L+
Sbjct: 451 NKRLYALRLLKKSGVPVQDLV 471
>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
Length = 829
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 5 LINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLV 145
L N L KEY+ +E+ YRL K R G + E+A LY ++
Sbjct: 733 LANVLLALKEYDLALEVAQESYRLRKER--LGTHPETARILYMIGVI 777
>SB_41565| Best HMM Match : Tet_res_leader (HMM E-Value=7.5)
Length = 58
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 17 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 115
+S N YE K++ S RLAK+R+ +Y E+
Sbjct: 15 MSCNSSYEAKLKRSSSRMRLAKHRHILHHYTEN 47
>SB_15572| Best HMM Match : Planc_extracel (HMM E-Value=9.3)
Length = 45
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 17 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 115
+S N YE K++ S RLAK+R+ +Y E+
Sbjct: 2 MSCNSSYEVKLKRSKSRMRLAKHRHILHHYTEN 34
>SB_26058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 17 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 115
LS N YE K++ S RLAK+R+ +Y E+
Sbjct: 37 LSCNLNYEAKLKRSKSRLRLAKHRHILHHYTEN 69
>SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
Length = 1626
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 417 HPDDVSPHPPLLGYCSNHKQVSQKC 491
H + PHPP YCS+ S+ C
Sbjct: 262 HQQNQGPHPPQCVYCSDKSHKSKDC 286
>SB_11840| Best HMM Match : DUF858 (HMM E-Value=8.1e-15)
Length = 257
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +3
Query: 549 TEFIEHLYVNFDFEAGRRKLNQCQAVL--LTDFFLIACLGRVCRK 677
T+F++ L + FD EAGR + CQ V+ LTD ++ L R C+K
Sbjct: 173 TKFLKEL-LEFDPEAGRYDVIWCQWVMLYLTDEDFVSFLNR-CKK 215
>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 462 SNHKQVSQKCLEGPCEVIQQEAYTYRD 542
SN K + CL+GP E+I++E+ + D
Sbjct: 684 SNEKFEDESCLQGPVELIKEESSSTPD 710
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,551,432
Number of Sequences: 59808
Number of extensions: 498117
Number of successful extensions: 1325
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -