Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0939
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic in... 99 1e-21
Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z73428-2|CAA97806.2| 572|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z69662-3|CAA93502.1| 449|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical pr... 28 5.5
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 28 7.3
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 28 7.3
AF077537-14|AAC26283.1| 556|Caenorhabditis elegans Hypothetical... 28 7.3
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :... 28 7.3
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 28 7.3
Z70212-10|CAA94169.2| 319|Caenorhabditis elegans Hypothetical p... 27 9.6
Z50177-8|CAA90548.2| 319|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z49068-7|CAA88859.1| 552|Caenorhabditis elegans Hypothetical pr... 27 9.6
AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical... 27 9.6
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 27 9.6
AC006774-5|AAF60618.1| 363|Caenorhabditis elegans Hypothetical ... 27 9.6
>AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic
initiation factor protein3.E protein.
Length = 432
Score = 99 bits (238), Expect = 1e-21
Identities = 44/75 (58%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Frame = +1
Query: 298 QALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVIINR 477
+ + QR WL+HW+LFV++N+ KGRD IIEMFL + YLNAIQ + PH+LRYLA AV+ ++
Sbjct: 206 ELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQVLAPHLLRYLAVAVVTSK 265
Query: 478 SR-RNALKDLVKLFN 519
SR +N+LKDLVK+ +
Sbjct: 266 SRQKNSLKDLVKVID 280
Score = 89.0 bits (211), Expect = 3e-18
Identities = 37/83 (44%), Positives = 61/83 (73%)
Frame = +2
Query: 5 LINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLW 184
++ HL+ N + F ++M+D++++ +K+ YECGNY ++ LY+ + +++ D NYL+ L+
Sbjct: 113 ILEHLTQN--HNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALY 170
Query: 185 GKLASEILVQNWDGALDDLTKLR 253
GKLASEIL+Q W+ A DDL KLR
Sbjct: 171 GKLASEILLQEWEHARDDLLKLR 193
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +3
Query: 471 KQVSQKCLEGPCEVIQQEAYTYRDPITEFIEHLYVNFDFEAGRRKLNQCQAVLLTDFFLI 650
K + L+ +VI E ++Y+DP+T+F+ LY+ +DF+ + L +C+ VL DFFL
Sbjct: 265 KSRQKNSLKDLVKVIDIERHSYKDPVTDFLTCLYIKYDFDEAQEMLQKCEEVLSNDFFLT 324
Query: 651 ACLG 662
A LG
Sbjct: 325 AVLG 328
>Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical
protein C27H6.4b protein.
Length = 331
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +2
Query: 29 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 208
K Y+ + ID ++RLAK+ E GN VE +++ K Y + W ++ L
Sbjct: 130 KRYDAGEKSIDVLWRLAKFCNEIGNRVEKDKRK---DIIVE--GKKYATEAWNTDSNNFL 184
Query: 209 VQNWDGALD-DLTKLRGSSITVEPVPLPATCKPY 307
W + +T+ G T E + CK Y
Sbjct: 185 AARWAALMSGKVTEYLG---TKEKIEEGKHCKEY 215
>Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical
protein C27H6.4a protein.
Length = 272
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +2
Query: 29 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 208
K Y+ + ID ++RLAK+ E GN VE +++ K Y + W ++ L
Sbjct: 71 KRYDAGEKSIDVLWRLAKFCNEIGNRVEKDKRK---DIIVE--GKKYATEAWNTDSNNFL 125
Query: 209 VQNWDGALD-DLTKLRGSSITVEPVPLPATCKPY 307
W + +T+ G T E + CK Y
Sbjct: 126 AARWAALMSGKVTEYLG---TKEKIEEGKHCKEY 156
>Z73428-2|CAA97806.2| 572|Caenorhabditis elegans Hypothetical
protein M142.2 protein.
Length = 572
Score = 28.7 bits (61), Expect = 4.2
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = -1
Query: 439 CGDTSSGWRSSTKA-YTGTFR*SNHVL*HD*RTRIATSEPARSVAVGLACCWQWNRLHRY 263
CG G ++STK + G +H HD R + S ++GL + +HRY
Sbjct: 234 CGPDRIGVKASTKQPFEGNVFVMDHY--HDEECRAGPEKFPDSRSIGLTVPFSACNVHRY 291
Query: 262 R*TSKFG*IIERAIPILYQNFASQFTPKNRQIILV 158
R + G +E +I + F S F K Q + V
Sbjct: 292 RSLNPKGIFVEVSIVFM---FHSLFMTKTDQTVKV 323
>Z69662-3|CAA93502.1| 449|Caenorhabditis elegans Hypothetical
protein F56D5.3 protein.
Length = 449
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +2
Query: 38 EFKIEMIDSMYRLAKYRYECG-NYVE-SASYLYFCQLVMSPTDKNYLSVLWGKL--ASEI 205
+ K E++D AK+ YECG + V+ ++ Y SPT N G + + +
Sbjct: 166 QIKTEVVDRFVYAAKFAYECGFDGVQLHGAHGYLLTQFTSPTTNNRNDKYGGSIENRNRV 225
Query: 206 LVQNWDGALDDLTKLRGSSITVE 274
+++ +D ++ + G I ++
Sbjct: 226 IIEIYDEIRKEIPETSGFLIGIK 248
>Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical protein
F46F6.2 protein.
Length = 1012
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 441 PPLLGYCSNHKQVSQKCLEGPCEVIQQEAYTYRDPITEFIEHLYVNFDF 587
PP N + VS LE E + A + PITE + L+ NFDF
Sbjct: 960 PPFQPQIRNPEDVSNFDLEFTQEKARFSAASSTRPITEADQRLFNNFDF 1008
>Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical protein
F46F6.2 protein.
Length = 1012
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 441 PPLLGYCSNHKQVSQKCLEGPCEVIQQEAYTYRDPITEFIEHLYVNFDF 587
PP N + VS LE E + A + PITE + L+ NFDF
Sbjct: 960 PPFQPQIRNPEDVSNFDLEFTQEKARFSAASSTRPITEADQRLFNNFDF 1008
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -3
Query: 614 LIQFSTARFKVKINVKMFNELCDRISIGVSFLLNNFTRSFKAF 486
+ FST V N+K F+E D SIG + ++N+ +SF+ F
Sbjct: 779 IFNFSTNWKIVNQNLKQFSE--DIESIGTLYTISNWQKSFERF 819
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -3
Query: 614 LIQFSTARFKVKINVKMFNELCDRISIGVSFLLNNFTRSFKAF 486
+ FST V N+K F+E D SIG + ++N+ +SF+ F
Sbjct: 779 IFNFSTNWKIVNQNLKQFSE--DIESIGTLYTISNWQKSFERF 819
>AF077537-14|AAC26283.1| 556|Caenorhabditis elegans Hypothetical
protein F16G10.15 protein.
Length = 556
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 438 HPPLLGYCSNHKQVSQKCLEGPCEVIQQEAYTYRDPITEFIEHLYVNFDF 587
HP + HK ++ K C + + Y D + E +EH+++N +F
Sbjct: 39 HPDFM-VVYEHKGLNTKVRRTTCSKLLVQGKEYIDAMCEDLEHIFMNANF 87
>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform b
protein.
Length = 1147
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -3
Query: 614 LIQFSTARFKVKINVKMFNELCDRISIGVSFLLNNFTRSFKAF 486
+ FST V N+K F+E D SIG + ++N+ +SF+ F
Sbjct: 779 IFNFSTNWKIVNQNLKQFSE--DIESIGTLYTISNWQKSFERF 819
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -3
Query: 614 LIQFSTARFKVKINVKMFNELCDRISIGVSFLLNNFTRSFKAF 486
+ FST V N+K F+E D SIG + ++N+ +SF+ F
Sbjct: 779 IFNFSTNWKIVNQNLKQFSE--DIESIGTLYTISNWQKSFERF 819
>Z70212-10|CAA94169.2| 319|Caenorhabditis elegans Hypothetical
protein R04D3.10 protein.
Length = 319
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 403 LYLNAIQTMCPHILRYLATAVIINRSRRNALKDLVKLFNKKLTPIEILSQSSLNIFTLIL 582
+++ +QTMC L TA IIN RRNA L + + I I ++N+
Sbjct: 10 IFMIILQTMCMLYNIVLLTATIIN--RRNAALPLAYIVLMSIPGILITVFLNVNVAAFAF 67
Query: 583 TLKRAVEN*INA 618
+ EN + A
Sbjct: 68 LTEEEYENYLTA 79
>Z50177-8|CAA90548.2| 319|Caenorhabditis elegans Hypothetical
protein R04D3.10 protein.
Length = 319
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 403 LYLNAIQTMCPHILRYLATAVIINRSRRNALKDLVKLFNKKLTPIEILSQSSLNIFTLIL 582
+++ +QTMC L TA IIN RRNA L + + I I ++N+
Sbjct: 10 IFMIILQTMCMLYNIVLLTATIIN--RRNAALPLAYIVLMSIPGILITVFLNVNVAAFAF 67
Query: 583 TLKRAVEN*INA 618
+ EN + A
Sbjct: 68 LTEEEYENYLTA 79
>Z49068-7|CAA88859.1| 552|Caenorhabditis elegans Hypothetical
protein K01C8.8 protein.
Length = 552
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 62 SMYRLAKYRYECGNYVESASYLYFCQLVMSPT-DKNYLSVLWGKLASEILVQ 214
S Y + +YR + ++ S S+LY +L P+ N V W K +I+++
Sbjct: 298 STYVIPEYRLDYYDFEGSNSFLYDIRLSQDPSIAGNVAIVFWNKKLKQIILK 349
>AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32b protein.
Length = 216
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 212 VPKFR*PIYPKEPTNNSCQLATSPVD 135
V +FR P Y +PT+NS L P+D
Sbjct: 47 VGQFRRPRYSADPTSNSTDLQLRPLD 72
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 212 VPKFR*PIYPKEPTNNSCQLATSPVD 135
V +FR P Y +PT+NS L P+D
Sbjct: 215 VGQFRRPRYSADPTSNSTDLQLRPLD 240
>AC006774-5|AAF60618.1| 363|Caenorhabditis elegans Hypothetical
protein Y46H3A.4 protein.
Length = 363
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 438 HPPLLGYCSNHK 473
HPPLLG+C+N K
Sbjct: 253 HPPLLGFCTNTK 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,860,180
Number of Sequences: 27780
Number of extensions: 380985
Number of successful extensions: 1264
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -