Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0939
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57290.1 68416.m06377 eukaryotic translation initiation facto...    93   2e-19
At5g14260.3 68418.m01668 SET domain-containing protein low simil...    31   0.55 
At5g14260.2 68418.m01667 SET domain-containing protein low simil...    31   0.55 
At5g14260.1 68418.m01666 SET domain-containing protein low simil...    31   0.55 
At5g61690.1 68418.m07740 ABC transporter family protein ABC tran...    30   1.7  
At2g18090.1 68415.m02103 PHD finger family protein / SWIB comple...    30   1.7  
At1g21680.1 68414.m02713 expressed protein similar to TolB prote...    30   1.7  
At5g27380.1 68418.m03269 glutathione synthetase (GSH2) non-conse...    29   2.2  
At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR cla...    29   3.9  
At3g23590.1 68416.m02967 expressed protein                             28   6.8  
At3g11480.1 68416.m01400 S-adenosyl-L-methionine:carboxyl methyl...    28   6.8  
At1g61310.1 68414.m06910 disease resistance protein (CC-NBS-LRR ...    27   8.9  

>At3g57290.1 68416.m06377 eukaryotic translation initiation factor
           3E / eIF3e (TIF3E1) identical to eukaryotic initiation
           factor 3E subunit [Arabidopsis thaliana]
           gi|12407658|gb|AAG53613
          Length = 441

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 41/82 (50%), Positives = 58/82 (70%)
 Frame = +1

Query: 280 STASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLAT 459
           S +S +  +Q R WL+HW L++FFNH  GR  II++F  +  YLNAIQT  PH+LRYLAT
Sbjct: 202 SFSSPLNQVQNRIWLMHWGLYIFFNHDNGRTQIIDLF-NQDKYLNAIQTSAPHLLRYLAT 260

Query: 460 AVIINRSRRNALKDLVKLFNKK 525
           A I+N+ RR  LK+ +K+  ++
Sbjct: 261 AFIVNKRRRPQLKEFIKVIQQE 282



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/75 (46%), Positives = 56/75 (74%)
 Frame = +2

Query: 29  KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 208
           + Y+   + I+++Y+ AK+++ECGNY  +A YLY  + + S  +++ LS LWGKLASEIL
Sbjct: 122 ERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRTLCSNLERS-LSALWGKLASEIL 180

Query: 209 VQNWDGALDDLTKLR 253
           +QNWD AL++L +L+
Sbjct: 181 MQNWDIALEELNRLK 195



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 22/47 (46%), Positives = 37/47 (78%)
 Frame = +3

Query: 507 EVIQQEAYTYRDPITEFIEHLYVNFDFEAGRRKLNQCQAVLLTDFFL 647
           +VIQQE Y+Y+DPI EF+  ++VN+DF+  ++K+ +C+ V++ D FL
Sbjct: 277 KVIQQEHYSYKDPIIEFLACVFVNYDFDGAQKKMKECEEVIVNDPFL 323


>At5g14260.3 68418.m01668 SET domain-containing protein low
           similarity to ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit N-methyltransferase
           I [Spinacia oleracea] GI:3403236; contains Pfam profile
           PF00856: SET domain
          Length = 514

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 441 PPLLGYCSNHKQVSQKCLEGPCEVIQQEAYTYRDPI 548
           PPLL YCSN K +    ++G  E++    Y   DPI
Sbjct: 291 PPLLAYCSNCKAM-LTAVDGAVELVVDRPYKAGDPI 325


>At5g14260.2 68418.m01667 SET domain-containing protein low
           similarity to ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit N-methyltransferase
           I [Spinacia oleracea] GI:3403236; contains Pfam profile
           PF00856: SET domain
          Length = 514

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 441 PPLLGYCSNHKQVSQKCLEGPCEVIQQEAYTYRDPI 548
           PPLL YCSN K +    ++G  E++    Y   DPI
Sbjct: 291 PPLLAYCSNCKAM-LTAVDGAVELVVDRPYKAGDPI 325


>At5g14260.1 68418.m01666 SET domain-containing protein low
           similarity to ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit N-methyltransferase
           I [Spinacia oleracea] GI:3403236; contains Pfam profile
           PF00856: SET domain
          Length = 514

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 441 PPLLGYCSNHKQVSQKCLEGPCEVIQQEAYTYRDPI 548
           PPLL YCSN K +    ++G  E++    Y   DPI
Sbjct: 291 PPLLAYCSNCKAM-LTAVDGAVELVVDRPYKAGDPI 325


>At5g61690.1 68418.m07740 ABC transporter family protein ABC
           transport protein, Dictyostelium discoideum, PIR:T18288
          Length = 954

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = -1

Query: 238 IIERAIPILYQNFASQFTPKNRQIILVSWRHHQLTKVKI 122
           I++  +P+LYQ F + F  KN   +L+SWR+ + T ++I
Sbjct: 2   ILQEGLPLLYQQFTALF-GKN---LLLSWRNKRATCLQI 36


>At2g18090.1 68415.m02103 PHD finger family protein / SWIB complex
           BAF60b domain-containing protein / GYF domain-containing
           protein contains Pfam profiles PF02201: BAF60b domain of
           the SWIB complex, PF02213: GYF domain, PF00628:
           PHD-finger
          Length = 824

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 462 CSSQVAEDVGTHRLDGVQVQRLIQEHFDDQITS 364
           C S++    G  R+D +++ +L+  HF DQ+ S
Sbjct: 344 CDSKLMRLFGKERVDNLEMLKLLDSHFIDQVRS 376


>At1g21680.1 68414.m02713 expressed protein similar to TolB protein
           precursor (SP:Q9ZDM5) {Rickettsia prowazekii}; ESTs
           gb|N96028, gb|F14286, gb|T20680, gb|F14443, gb|AA657300
           and gb|N65244 come from this gene
          Length = 706

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 492 GISARPVYDYCSSQVAEDVGTHRLDGVQVQRLIQEHFDD 376
           GISA P+ +    Q   D+ T +LDG  V+RL    ++D
Sbjct: 622 GISAEPISNPHHYQPYGDIFTVKLDGSNVRRLTHNSYED 660


>At5g27380.1 68418.m03269 glutathione synthetase (GSH2)
           non-consensus AT donor splice site at exon 6, AC
           acceptor splice site at exon 7; identical to
           Swiss-Prot:P46416 glutathione synthetase, chloroplast
           precursor (Glutathione synthase) (GSH synthetase)
           (GSH-S) [Arabidopsis thaliana]
          Length = 478

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 605 FSTARFKVKINVK-MFNELCDRISIGVSFLLNNFTRSFK 492
           F  A +K   NV  +FNEL DR+S+   FL ++ +R+ K
Sbjct: 64  FPEAYWKQACNVTPLFNELIDRVSLDGKFLQDSLSRTKK 102


>At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 762

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 170 LSVLWGKLASEILVQNWDGALDDLTK 247
           LSV+   +AS+ +VQ W+ A+D LT+
Sbjct: 240 LSVIGETMASKTMVQEWEHAIDVLTR 265


>At3g23590.1 68416.m02967 expressed protein 
          Length = 1309

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +1

Query: 499 DLVKLFNKKLTPIEILSQSSLNIFTLILTLKRAVEN*INAKLYF*LTFS*SPVWEEFVEN 678
           D  + +N+K   +E L   SLN    I  +   + N + A+L + ++ + +  W EFV+ 
Sbjct: 197 DAPERYNEKTGSLEKLQ--SLNTIMAIELIAEFLRNTVIARLLYLVSSNRASKWHEFVQK 254

Query: 679 ARLDG 693
            +L G
Sbjct: 255 VQLLG 259


>At3g11480.1 68416.m01400 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to SAM:benzoic
           acid carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus] and to
           SAM:salicylic acid carboxyl methyltransferase
           (SAMT)[GI:6002712][Clarkia breweri]
          Length = 379

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 23/64 (35%), Positives = 34/64 (53%)
 Frame = +3

Query: 471 KQVSQKCLEGPCEVIQQEAYTYRDPITEFIEHLYVNFDFEAGRRKLNQCQAVLLTDFFLI 650
           K+V QK  EG  E+ + E++ +       + H Y   DFEAGR + N  +AV  ++  LI
Sbjct: 290 KEVIQK--EGSFEINELESHGFD------LGHYYEEDDFEAGRNEANGIRAV--SEPMLI 339

Query: 651 ACLG 662
           A  G
Sbjct: 340 AHFG 343


>At1g61310.1 68414.m06910 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 170 LSVLWGKLASEILVQNWDGALDDLTKLRGSSITVEPVPLP 289
           L+V+   +AS+ +VQ W+ A+D LT+       +E   LP
Sbjct: 353 LNVIGETMASKTMVQEWEYAIDVLTRSAAEFSGMENKILP 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,761,720
Number of Sequences: 28952
Number of extensions: 345280
Number of successful extensions: 980
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)