Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0938
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.3  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    27   2.3  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    25   6.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.1  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   9.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +1

Query: 316  KKESSKSIHPVKSYEVTNIKNNIQSN*ELPS 408
            K ES  ++  +K+Y VTNI+NNI++   LPS
Sbjct: 1127 KNESKAALEQMKNY-VTNIENNIRAK-LLPS 1155


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 325 SSKSIHPVKSYEVTNIKNNIQSN*ELPSFLKSXKNPKVDFISXIRE 462
           S  +I+P+ +++VT+I   + +   L S LK  KN     I+ +RE
Sbjct: 352 SQTAINPLANFDVTSIPVEVATEIVLTSLLKIDKNYFHQQINMLRE 397


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 427 FXPTSKKKVVLNSTVCCFLYLLPHN 353
           F P S   +VL  T CC +YL   N
Sbjct: 110 FNPISNTTLVLFLTECCNIYLFSEN 134


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -1

Query: 488  KRFFASHNISRIXEMKSTLGFLXDFKKEGSSQFDCMLFFIFVTS*LLTG*IDFDDSFFIR 309
            K   ASH I    +  S +GF+    K   +++    F++F++S  LT    FD    I 
Sbjct: 3169 KGISASHLIVHDHKDPSLIGFINSACKASLAKYMVPSFYVFISSVPLTPTNKFDKKKVIE 3228

Query: 308  KLT 300
            + +
Sbjct: 3229 EFS 3231


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 67  RHALTKNRLQIEKKKIFKNKLTYTKNNNHRNRLA*Y*VIELFILYLSRTYLMQI*DLYDF 246
           ++ LT++ ++  KKK   N++   K NN +  L+ +     F++ L+      + D  DF
Sbjct: 171 KYGLTESEVEERKKKYGLNQMKEEKTNNIKKFLSFFVGPIQFVMELAAALAAGLRDWVDF 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,012
Number of Sequences: 5004
Number of extensions: 35768
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)