Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0938
         (632 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118555-1|AAM49924.1|  743|Drosophila melanogaster LD35784p pro...    29   6.9  
AF279146-1|AAF99080.1|  743|Drosophila melanogaster replication ...    29   6.9  
AE013599-2051|AAF58141.2|  743|Drosophila melanogaster CG8171-PA...    29   6.9  

>AY118555-1|AAM49924.1|  743|Drosophila melanogaster LD35784p
           protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 322 ESSKSIHPVKSYEVTNIKNNIQSN*ELPSFLKSXKNPKV 438
           ES+K     ++ EVT     IQ++ E+P    S KNP V
Sbjct: 548 ESNKKTEEQQAGEVTRTSTAIQTSQEVPGISGSSKNPTV 586


>AF279146-1|AAF99080.1|  743|Drosophila melanogaster replication
           protein double parked protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 322 ESSKSIHPVKSYEVTNIKNNIQSN*ELPSFLKSXKNPKV 438
           ES+K     ++ EVT     IQ++ E+P    S KNP V
Sbjct: 548 ESNKKTEEQQAGEVTRTSTAIQTSQEVPGISGSSKNPTV 586


>AE013599-2051|AAF58141.2|  743|Drosophila melanogaster CG8171-PA
           protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 322 ESSKSIHPVKSYEVTNIKNNIQSN*ELPSFLKSXKNPKV 438
           ES+K     ++ EVT     IQ++ E+P    S KNP V
Sbjct: 548 ESNKKTEEQQAGEVTRTSTAIQTSQEVPGISGSSKNPTV 586


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,584,112
Number of Sequences: 53049
Number of extensions: 326813
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)