Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0938
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 266 SHNGSMRKSYKS*ICIKYVRDKYKMNNSITQ 174
           SH+    + +KS IC++++ +  KM    T+
Sbjct: 476 SHSRCPPEIHKSCICVRFIAEHTKMLEDSTK 506


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 266 SHNGSMRKSYKS*ICIKYVRDKYKMNNSITQ 174
           SH+    + +KS IC++++ +  KM    T+
Sbjct: 476 SHSRCPPEIHKSCICVRFIAEHTKMLEDSTK 506


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +2

Query: 419 RXKTLKSISSRLFVKYCDLQRIAC 490
           R + + + + +++  +C+L R AC
Sbjct: 113 RHRPVCASNGKIYANHCELHRAAC 136


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 310 LIKKESSKSIHPVKSYEVTNIKNN 381
           +I   S+K+IH   +Y   N  NN
Sbjct: 314 IISSLSNKTIHNNNNYNNNNYNNN 337


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 310 LIKKESSKSIHPVKSYEVTNIKNNIQSN 393
           +I   S+K+IH   +Y+     NN  +N
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNN 108


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 310 LIKKESSKSIHPVKSYEVTNIKNNIQSN 393
           +I   S+K+IH   +Y+     NN  +N
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNN 108


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 310 LIKKESSKSIHPVKSYEVTNIKNNIQSN 393
           +I   S+K+IH   +Y+     NN  +N
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNN 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 310 LIKKESSKSIHPVKSYEVTNIKNNIQSN 393
           +I   S+K+IH   +Y+     NN  +N
Sbjct: 314 IISSLSNKTIHNNNNYKYNYNNNNYNNN 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,118
Number of Sequences: 438
Number of extensions: 2128
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)