Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0937
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   3.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   3.9  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   3.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   3.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   3.9  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   5.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.1  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   6.7  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 52  IKYNHNSVQTYNSN*L*SNFDY 117
           ++Y +++ Q YNSN L + + Y
Sbjct: 60  LQYGYHNHQNYNSNVLSNGYGY 81


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 52  IKYNHNSVQTYNSN*L*SNFDY 117
           ++Y +++ Q YNSN L + + Y
Sbjct: 60  LQYGYHNHQNYNSNVLSNGYGY 81


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 234 SLLVLWLFNHQTGNYP 187
           ++L  WLF H T  YP
Sbjct: 191 NILRAWLFQHLTHPYP 206


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 234 SLLVLWLFNHQTGNYP 187
           ++L  WLF H T  YP
Sbjct: 347 NILRAWLFQHLTHPYP 362


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 52  IKYNHNSVQTYNSN*L*SNFDY 117
           ++Y +++ Q YNSN L + + Y
Sbjct: 60  LQYGYHNHQNYNSNVLSNGYGY 81


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 52  IKYNHNSVQTYNSN*L*SNFDY 117
           ++Y +++ Q YNSN L + + Y
Sbjct: 60  LQYGYHNHQNYNSNVLSNGYGY 81


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 84  VSLYTIMIVFYSSTSGPGHTLLWLWLR 4
           V + T+ I+F  +  G    LL LW R
Sbjct: 37  VEVATLAIIFLVTVIGNSTVLLALWTR 63


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 192 YPFPSIGHLAHYGLGYTFNITRGP 121
           YP P  GH     L  T NI   P
Sbjct: 323 YPSPVPGHSTSPNLPLTHNIAHNP 346


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -1

Query: 512 LHIYFLFFSSYIICLL 465
           + +YF F+ +Y +C++
Sbjct: 150 VQLYFQFYYTYFLCVI 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,720
Number of Sequences: 336
Number of extensions: 2797
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)