Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0937
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.2  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    26   4.2  
SPBC21C3.16c |spt4||transcription elongation factor complex subu...    25   9.6  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 228 LVLWLFNHQTGNYPFPSIGHLAHYGLGYTF 139
           LVL++ ++  G +PF + G  + YGL +TF
Sbjct: 23  LVLFVLSYVLG-WPFTNFGFFSVYGLRHTF 51


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +3

Query: 285 KSVQFPKIIEIELICGI----TWYHRYFSNKY 368
           KS + P++ ++   CG+    TWYH   + KY
Sbjct: 182 KSDKVPRVDKVCFTCGVNCSQTWYHNLKNKKY 213


>SPBC21C3.16c |spt4||transcription elongation factor complex subunit
           Spt4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 321 LICGITWYHRYFSNKYC 371
           LICGI   H  F+NK C
Sbjct: 13  LICGIVLPHSVFANKGC 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,670
Number of Sequences: 5004
Number of extensions: 43392
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)