Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0937
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0013 - 217743-217839,218021-218131,218226-218428,218540-21...    28   7.5  

>04_01_0013 -
           217743-217839,218021-218131,218226-218428,218540-218654,
           219038-219204,219505-219565,219872-219990,220206-220286
          Length = 317

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 244 IAVFVIGIMVI*SPNRELPFPKYWALSTLWLGLYV 140
           +A F++G+  +  PN ELP   +W +   W+  +V
Sbjct: 154 LAGFLVGLKQL-LPNLELPMCFFWKIKAKWMPFFV 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,651,042
Number of Sequences: 37544
Number of extensions: 229620
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)