Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0937
         (656 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013130-1|AAY67799.1| 2014|Homo sapiens leucine-rich repeat kin...    32   2.1  
BC146769-1|AAI46770.1| 1369|Homo sapiens LRRK1 protein protein.        32   2.1  
AK131075-1|BAC85125.1| 1112|Homo sapiens FLJ00262 protein protein.     32   2.1  
AB058693-1|BAB47419.1| 1369|Homo sapiens KIAA1790 protein protein.     32   2.1  
BX640746-1|CAE45856.1|  431|Homo sapiens hypothetical protein pr...    30   6.3  
AY028897-1|AAK30022.1| 1642|Homo sapiens ATP-binding cassette A5...    30   6.3  
AJ512612-1|CAD54757.1|  925|Homo sapiens ABCA5 transporter protein.    30   6.3  
AJ275973-1|CAB93535.3| 1642|Homo sapiens ATP-binding cassette pr...    30   6.3  

>DQ013130-1|AAY67799.1| 2014|Homo sapiens leucine-rich repeat kinase 1
            protein.
          Length = 2014

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 296  LYTFNAKRRNRCNS-RFSDSRFRYWYYGYLITKQGITLS 183
            +Y+F   +RNRC++ R   ++  YW  G L+T  G  LS
Sbjct: 1061 IYSFTGNQRNRCSTFRVKRNQTIYWQEGLLVTFDGGYLS 1099


>BC146769-1|AAI46770.1| 1369|Homo sapiens LRRK1 protein protein.
          Length = 1369

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 296 LYTFNAKRRNRCNS-RFSDSRFRYWYYGYLITKQGITLS 183
           +Y+F   +RNRC++ R   ++  YW  G L+T  G  LS
Sbjct: 416 IYSFTGNQRNRCSTFRVKRNQTIYWQEGLLVTFDGGYLS 454


>AK131075-1|BAC85125.1| 1112|Homo sapiens FLJ00262 protein protein.
          Length = 1112

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 296 LYTFNAKRRNRCNS-RFSDSRFRYWYYGYLITKQGITLS 183
           +Y+F   +RNRC++ R   ++  YW  G L+T  G  LS
Sbjct: 159 IYSFTGNQRNRCSTFRVKRNQTIYWQEGLLVTFDGGYLS 197


>AB058693-1|BAB47419.1| 1369|Homo sapiens KIAA1790 protein protein.
          Length = 1369

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 296 LYTFNAKRRNRCNS-RFSDSRFRYWYYGYLITKQGITLS 183
           +Y+F   +RNRC++ R   ++  YW  G L+T  G  LS
Sbjct: 416 IYSFTGNQRNRCSTFRVKRNQTIYWQEGLLVTFDGGYLS 454


>BX640746-1|CAE45856.1|  431|Homo sapiens hypothetical protein
           protein.
          Length = 431

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = -3

Query: 237 FSLLVLWLFN---HQTGNYPFPSIGHLAHYGLGYTF-NITRGPAVVEIRL*LIGIVSLYT 70
           F   ++WLF+   H T       + HL  +  G +F N+T GP  + I + ++ + S++ 
Sbjct: 22  FPKSLVWLFSPFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFY 81

Query: 69  IMIVFYSSTSGPG 31
           +++  Y     PG
Sbjct: 82  VLLAVYLDQVIPG 94


>AY028897-1|AAK30022.1| 1642|Homo sapiens ATP-binding cassette A5
           protein.
          Length = 1642

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = -3

Query: 237 FSLLVLWLFN---HQTGNYPFPSIGHLAHYGLGYTF-NITRGPAVVEIRL*LIGIVSLYT 70
           F   ++WLF+   H T       + HL  +  G +F N+T GP  + I + ++ + S++ 
Sbjct: 351 FPKSLVWLFSPFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFY 410

Query: 69  IMIVFYSSTSGPG 31
           +++  Y     PG
Sbjct: 411 VLLAVYLDQVIPG 423


>AJ512612-1|CAD54757.1|  925|Homo sapiens ABCA5 transporter protein.
          Length = 925

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = -3

Query: 237 FSLLVLWLFN---HQTGNYPFPSIGHLAHYGLGYTF-NITRGPAVVEIRL*LIGIVSLYT 70
           F   ++WLF+   H T       + HL  +  G +F N+T GP  + I + ++ + S++ 
Sbjct: 351 FPKSLVWLFSPFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFY 410

Query: 69  IMIVFYSSTSGPG 31
           +++  Y     PG
Sbjct: 411 VLLAVYLDQVIPG 423


>AJ275973-1|CAB93535.3| 1642|Homo sapiens ATP-binding cassette
           protein protein.
          Length = 1642

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = -3

Query: 237 FSLLVLWLFN---HQTGNYPFPSIGHLAHYGLGYTF-NITRGPAVVEIRL*LIGIVSLYT 70
           F   ++WLF+   H T       + HL  +  G +F N+T GP  + I + ++ + S++ 
Sbjct: 351 FPKSLVWLFSPFCHCTFVIGIAQVMHLEDFNEGASFSNLTAGPYPLIITIIMLTLNSIFY 410

Query: 69  IMIVFYSSTSGPG 31
           +++  Y     PG
Sbjct: 411 VLLAVYLDQVIPG 423


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,588,485
Number of Sequences: 237096
Number of extensions: 1475272
Number of successful extensions: 2253
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2253
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)