Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0937
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   7.8  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 55  KYNHNSVQTYNSN 93
           KYN+N+   YN+N
Sbjct: 97  KYNYNNKYNYNNN 109


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 19  QQRVAGSASRTIKYNHNSVQTYNSN*L*SNFDY 117
           + ++  S S    +N+N+   YN+  L  N +Y
Sbjct: 300 EPKIISSLSNKTIHNNNNYNNYNNKKLYYNINY 332


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 28  VAGSASRTIKYNHNSVQTYNSN 93
           ++  ++RTI  N+N    YN+N
Sbjct: 82  ISSLSNRTIHNNNNYKYNYNNN 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,997
Number of Sequences: 438
Number of extensions: 3784
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)