Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0936
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   2.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.1  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    23   3.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.6  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = -1

Query: 449 IFL*LTLLDVCTLHACYLNVYFIHLYIGFFIFLLLRWVDVLTAYLV 312
           I++   L    TLH C+ +  +   +I FF  +   ++ ++   +V
Sbjct: 48  IYVLTILTSSVTLHVCFNSYMYAFTHIFFFFAICCDFIALIVVNIV 93


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 228  YYETFEHISKSGWRHLRCR 284
            YYE   ++ K GW+ +R R
Sbjct: 2104 YYEICTNVIKKGWKVVRDR 2122



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 228  YYETFEHISKSGW 266
            YYE  E + K GW
Sbjct: 2602 YYEICERVKKRGW 2614


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 114 NIKLIYIAAYGSLNRLTEFTETLFHLISF 200
           N+  I I  +GS+  +    +T ++LISF
Sbjct: 173 NLYFIIIQLFGSMKIVKGTLKTAYYLISF 201


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 506 ITFHVTS*LIVSGKR 550
           +TFH +S L VSG R
Sbjct: 124 LTFHTSSNLTVSGLR 138


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 506 ITFHVTS*LIVSGKR 550
           +TFH +S L VSG R
Sbjct: 124 LTFHTSSNLTVSGLR 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,588
Number of Sequences: 336
Number of extensions: 2911
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)