Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0936
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0246 + 23591759-23593042                                         30   2.0  
12_01_0120 + 912312-912615,913145-913371,913507-913754,914293-91...    29   2.6  
11_01_0112 + 875447-875490,875854-876359,876750-876976,877112-87...    29   2.6  
01_04_0121 - 16307839-16308315,16308394-16308793,16308978-163094...    29   3.5  

>05_05_0246 + 23591759-23593042
          Length = 427

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 319 TWCLVVTGAHRHLQRKCRHPLLDIC 245
           TWCL++  AH   Q + R  +L++C
Sbjct: 219 TWCLMLLAAHPEWQDRARAEVLEVC 243


>12_01_0120 +
           912312-912615,913145-913371,913507-913754,914293-914656,
           914758-915154,915671-915693,916645-916987,917513-917532,
           918418-918527,919484-920255
          Length = 935

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 334 TCSQPTWCLVVTGAHRHLQRKCRHPLLDIC 245
           T +   WCL++  +H   Q + R   LDIC
Sbjct: 337 TSTTAAWCLMLLASHHEWQSRARVESLDIC 366


>11_01_0112 +
           875447-875490,875854-876359,876750-876976,877112-877237,
           877313-877359,877888-878251,878396-878779
          Length = 565

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 334 TCSQPTWCLVVTGAHRHLQRKCRHPLLDIC 245
           T +   WCL++  +H   Q + R   LDIC
Sbjct: 394 TSTTAAWCLMLLASHHEWQSRARVESLDIC 423


>01_04_0121 -
           16307839-16308315,16308394-16308793,16308978-16309452,
           16309936-16310353
          Length = 589

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 319 TWCLVVTGAHRHLQRKCRHPLLDIC 245
           TW +VV   H   Q + R  +LD+C
Sbjct: 391 TWAIVVLAMHPEWQERARQEVLDVC 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,655
Number of Sequences: 37544
Number of extensions: 242430
Number of successful extensions: 372
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)