Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0936
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 434 TLLDVCTLHACYLNVYFIHLYIGFFIFLLLRWV 336
           T L+V  +    L  Y  H YI   + +++ WV
Sbjct: 232 TCLEVVFVLKRRLGYYLFHTYIPTCLIVIMSWV 264


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 102 VVIYW*SFCTSCIYNDXXLRAFV 34
           VV  W  FC+ CI+ +  + A V
Sbjct: 353 VVNLWSGFCSQCIWQEKIVFAAV 375


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 132 CKLTLYSFVRVVIYW*SFCTSCI 64
           C+  ++  V  V++W  +C S I
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAI 57


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 132 CKLTLYSFVRVVIYW*SFCTSCI 64
           C+  ++  V  V++W  +C S I
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAI 505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,835
Number of Sequences: 438
Number of extensions: 3036
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)