Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0935
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   1.7  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   4.0  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   5.3  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    25   9.2  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = -1

Query: 99  KLCIYNYTHYLYLIHTLKYLY 37
           K+C+  Y+ +L+L+H+L+ +Y
Sbjct: 128 KICLLAYSVHLFLLHSLRMIY 148



 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -1

Query: 222 YLYINTRSKNFVPLFTKIAQYEISHTYREYREGMQNANIFYKLCIYNYTHYLYL 61
           Y +I T   NF+PLFT    Y +           Q  ++F   C Y Y + L L
Sbjct: 196 YFFI-TIVGNFIPLFTPRVWYPLFPEDNYQPSAEQVCSMFNFACSYGYLNPLVL 248


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 553 WYWKLTHVDTIFHLFL 600
           WYW LT   ++FH  +
Sbjct: 340 WYWNLTSTPSVFHYLI 355



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 468 KWYWELTRIGTICHY 512
           +WYW LT   ++ HY
Sbjct: 339 QWYWNLTSTPSVFHY 353


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 185 PFLRKLRSMKFPTLIENIEKECRMLTFFINCAF 87
           P +  L  ++FP+L E ++K    + F ++C F
Sbjct: 363 PIVLLLTLIRFPSLYEQLKKPRYTVCFVVSCIF 395


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 317 IIVGRAFASLCFMIYFSV 370
           +IVG  + S+CF IY SV
Sbjct: 333 LIVGGVWQSICFFIYASV 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,379
Number of Sequences: 5004
Number of extensions: 54062
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)