Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0935
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5167| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_14213| Best HMM Match : RVT_1 (HMM E-Value=1.4e-24)                 28   5.6  
SB_41234| Best HMM Match : CASP_C (HMM E-Value=0.79)                   28   7.4  

>SB_5167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 177 TKIAQYEISHTYREYREGMQNANIFYKLCIYNYTHYLYLIHTLKYLY 37
           T I  Y+ SHT  EY +       +Y  C +  T Y  + HT    Y
Sbjct: 471 TTIKYYDFSHTIAEYHDFRHTTTKYYDFC-HTTTKYYDIPHTTTKYY 516


>SB_14213| Best HMM Match : RVT_1 (HMM E-Value=1.4e-24)
          Length = 811

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -2

Query: 236 SCRASIYILIREAKTLYPFLRKLRSMKFPTLIENIEKECRMLTFFINCAF 87
           S   S Y+L+ +  + +P +RKL +++  T+I +++   R + +  N  F
Sbjct: 557 SWNGSPYLLLSDYYSKFPIVRKLTNIQSSTVIAHLKGILRNMAYQTNLVF 606


>SB_41234| Best HMM Match : CASP_C (HMM E-Value=0.79)
          Length = 296

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -1

Query: 156 ISHTYREYREGMQNANIFYKLCIYNYTHYLYLIHTLKYLYSLFIVKLLLL 7
           +S   RE  E  QN  +FY L +  Y +  YL+H L  +  + ++ ++++
Sbjct: 115 LSKESREKLEAYQN--LFYLLQLEAYLNLFYLLHVLMMVMVMMVMVMVMV 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,030,605
Number of Sequences: 59808
Number of extensions: 383229
Number of successful extensions: 874
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)