Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0935
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu... 29 2.8
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu... 29 2.8
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu... 29 2.8
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu... 29 2.8
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO... 29 2.8
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR... 29 2.8
AC006673-11|AAF39920.1| 311|Caenorhabditis elegans Hypothetical... 29 3.7
Z81586-10|CAD56598.1| 349|Caenorhabditis elegans Hypothetical p... 27 8.6
AF077529-3|AAN60535.1| 176|Caenorhabditis elegans Hypothetical ... 27 8.6
AF077529-2|AAC26254.1| 292|Caenorhabditis elegans Hypothetical ... 27 8.6
>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform a protein.
Length = 1144
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 267 KQLKLFRIDVIVSCKYLYINTRSKNFVPLFTKIAQYEISHTYREYRE 127
K++K+ DV V+ ++ T KN + F K YE HT +E
Sbjct: 441 KEIKIQFKDVPVAVHSAWVQTCDKNSLTAFIKFEHYESIHTIAPIKE 487
>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform d protein.
Length = 1147
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 267 KQLKLFRIDVIVSCKYLYINTRSKNFVPLFTKIAQYEISHTYREYRE 127
K++K+ DV V+ ++ T KN + F K YE HT +E
Sbjct: 441 KEIKIQFKDVPVAVHSAWVQTCDKNSLTAFIKFEHYESIHTIAPIKE 487
>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform b protein.
Length = 1328
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 267 KQLKLFRIDVIVSCKYLYINTRSKNFVPLFTKIAQYEISHTYREYRE 127
K++K+ DV V+ ++ T KN + F K YE HT +E
Sbjct: 625 KEIKIQFKDVPVAVHSAWVQTCDKNSLTAFIKFEHYESIHTIAPIKE 671
>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform c protein.
Length = 1331
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 267 KQLKLFRIDVIVSCKYLYINTRSKNFVPLFTKIAQYEISHTYREYRE 127
K++K+ DV V+ ++ T KN + F K YE HT +E
Sbjct: 625 KEIKIQFKDVPVAVHSAWVQTCDKNSLTAFIKFEHYESIHTIAPIKE 671
>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
protein.
Length = 1147
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 267 KQLKLFRIDVIVSCKYLYINTRSKNFVPLFTKIAQYEISHTYREYRE 127
K++K+ DV V+ ++ T KN + F K YE HT +E
Sbjct: 441 KEIKIQFKDVPVAVHSAWVQTCDKNSLTAFIKFEHYESIHTIAPIKE 487
>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
protein.
Length = 1331
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 267 KQLKLFRIDVIVSCKYLYINTRSKNFVPLFTKIAQYEISHTYREYRE 127
K++K+ DV V+ ++ T KN + F K YE HT +E
Sbjct: 625 KEIKIQFKDVPVAVHSAWVQTCDKNSLTAFIKFEHYESIHTIAPIKE 671
>AC006673-11|AAF39920.1| 311|Caenorhabditis elegans Hypothetical
protein K09D9.3 protein.
Length = 311
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Frame = -1
Query: 111 NIFYKLC------IYNYTHYLYLIHTLKYLYSLFI 25
NI K+C ++ + YLY++H L YL+ +FI
Sbjct: 219 NILKKICSHPTGKLFETSEYLYIVHILVYLWIVFI 253
>Z81586-10|CAD56598.1| 349|Caenorhabditis elegans Hypothetical
protein T05F1.13 protein.
Length = 349
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = -1
Query: 414 VDKSTLQ*FNHLFIDTEKYIMKHKLAKARPTMMNVNLNHLHFRVTFR*VKQLKLFRIDVI 235
+DKST++ F IDT +M+H L ++ +VN +T LKL +++ I
Sbjct: 115 IDKSTIKVFTMDPIDTFYSVMEHLLNLFTGSIHHVNFGQCTPNIT---GIILKLLKMEGI 171
Query: 234 VSCKYLYI 211
SC L I
Sbjct: 172 SSCNTLSI 179
>AF077529-3|AAN60535.1| 176|Caenorhabditis elegans Hypothetical
protein C09E8.2b protein.
Length = 176
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 585 YGIYMCEFPIPVTVSKKKSQLHSRS 511
YG +C P+PV KK+ LH S
Sbjct: 68 YGSVLCILPVPVGTCNKKNGLHCDS 92
>AF077529-2|AAC26254.1| 292|Caenorhabditis elegans Hypothetical
protein C09E8.2a protein.
Length = 292
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 585 YGIYMCEFPIPVTVSKKKSQLHSRS 511
YG +C P+PV KK+ LH S
Sbjct: 184 YGSVLCILPVPVGTCNKKNGLHCDS 208
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,915
Number of Sequences: 27780
Number of extensions: 305599
Number of successful extensions: 762
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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