Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0934
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 149 4e-37
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 148 6e-37
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 148 6e-37
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 99 6e-22
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 90 3e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 3e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 35 0.009
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 32 0.080
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 32 0.080
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 29 0.56
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.74
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 28 0.98
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 28 0.98
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 28 1.3
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 25 6.9
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 6.9
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 25 6.9
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 9.1
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 25 9.1
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 149 bits (360), Expect = 4e-37
Identities = 74/111 (66%), Positives = 86/111 (77%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
GHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VN
Sbjct: 94 GHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVN 153
Query: 437 KMDSTEPPYSEPRFEEIKKEVSSYSRRLATTQLLSLSCPFLDGHGDNMLEP 589
KMD+T +S+ RFEEI KE S++ +++ P GDNM+EP
Sbjct: 154 KMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEP 202
Score = 126 bits (304), Expect = 3e-30
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
IN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAER
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAER 67
Score = 46.0 bits (104), Expect = 5e-06
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3
Query: 186 GITIDIALWKFETSKYYVTIIDA 254
GITIDIALWKFET KY VT+IDA
Sbjct: 70 GITIDIALWKFETPKYNVTVIDA 92
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 148 bits (359), Expect = 6e-37
Identities = 73/111 (65%), Positives = 86/111 (77%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
GHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VN
Sbjct: 94 GHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVN 153
Query: 437 KMDSTEPPYSEPRFEEIKKEVSSYSRRLATTQLLSLSCPFLDGHGDNMLEP 589
KMD+T +S+ RFEEI KE S++ +++ P GDNM+EP
Sbjct: 154 KMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEP 202
Score = 126 bits (304), Expect = 3e-30
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
IN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAER
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAER 67
Score = 46.0 bits (104), Expect = 5e-06
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3
Query: 186 GITIDIALWKFETSKYYVTIIDA 254
GITIDIALWKFET KY VT+IDA
Sbjct: 70 GITIDIALWKFETPKYNVTVIDA 92
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 148 bits (359), Expect = 6e-37
Identities = 73/111 (65%), Positives = 86/111 (77%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
GHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VN
Sbjct: 94 GHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVN 153
Query: 437 KMDSTEPPYSEPRFEEIKKEVSSYSRRLATTQLLSLSCPFLDGHGDNMLEP 589
KMD+T +S+ RFEEI KE S++ +++ P GDNM+EP
Sbjct: 154 KMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEP 202
Score = 126 bits (304), Expect = 3e-30
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
IN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAER
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAER 67
Score = 46.0 bits (104), Expect = 5e-06
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3
Query: 186 GITIDIALWKFETSKYYVTIIDA 254
GITIDIALWKFET KY VT+IDA
Sbjct: 70 GITIDIALWKFETPKYNVTVIDA 92
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 98.7 bits (235), Expect = 6e-22
Identities = 44/89 (49%), Positives = 62/89 (69%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
GH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G+ L+V +N
Sbjct: 325 GHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN 384
Query: 437 KMDSTEPPYSEPRFEEIKKEVSSYSRRLA 523
KMD +SE R++E ++S + RR+A
Sbjct: 385 KMDEPSVQWSEERYKECVDKLSMFLRRVA 413
Score = 73.7 bits (173), Expect = 2e-14
Identities = 32/60 (53%), Positives = 44/60 (73%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD ER
Sbjct: 239 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEER 298
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 89.8 bits (213), Expect = 3e-19
Identities = 44/84 (52%), Positives = 55/84 (65%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
GHRDFI MI G S AD AVL+V + FE G +NGQTREHA L LG+ +++V VN
Sbjct: 264 GHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVN 323
Query: 437 KMDSTEPPYSEPRFEEIKKEVSSY 508
K+D +SE RF+EIK VS +
Sbjct: 324 KLDLMS--WSEDRFQEIKNIVSDF 345
Score = 72.1 bits (169), Expect = 6e-14
Identities = 30/60 (50%), Positives = 43/60 (71%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
+++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + ER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 73.3 bits (172), Expect = 3e-14
Identities = 39/89 (43%), Positives = 55/89 (61%)
Frame = +2
Query: 242 HH*CSGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 421
H C GH D+IKNMITG + D A+++V+A G+ QTREH LLA +GVKQ+
Sbjct: 120 HVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQI 172
Query: 422 IVGVNKMDSTEPPYSEPRFEEIKKEVSSY 508
+V +NK+D EP E E+++ +S Y
Sbjct: 173 VVYINKVDMVEPDMIELVEMEMRELLSEY 201
Score = 29.1 bits (62), Expect = 0.56
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKC 72
+NI IGHVD GK+T T I KC
Sbjct: 54 VNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 35.1 bits (77), Expect = 0.009
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +2
Query: 251 CSGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG 430
C GH + M+ G + D A+L++A QT EH + +K +I+
Sbjct: 115 CPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQLKHIIIL 168
Query: 431 VNKMDSTEPPYSEPRFEEIKK 493
NK+D +E ++ I K
Sbjct: 169 QNKVDLIRESAAEEHYQSILK 189
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 31.9 bits (69), Expect = 0.080
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCG 75
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAG 44
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 31.9 bits (69), Expect = 0.080
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCG 75
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAG 44
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.1 bits (62), Expect = 0.56
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCGGI 81
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.7 bits (61), Expect = 0.74
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCG 75
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 28.3 bits (60), Expect = 0.98
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 482 EIKKEVSSYSRRLATTQLLSLSCPFLDGHGDNMLEP 589
+IKK ++ + LAT L LS PF D M +P
Sbjct: 104 QIKKFINDIKKDLATESQLPLSAPFKDESTRTMTDP 139
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 28.3 bits (60), Expect = 0.98
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 482 EIKKEVSSYSRRLATTQLLSLSCPFLDGHGDNMLEP 589
+IKK ++ + LAT L LS PF D M +P
Sbjct: 104 QIKKFINDIKKDLATESQLPLSAPFKDESTRTMTDP 139
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = -2
Query: 269 NLCVQSINDGNIVLASFELPESNIDCDTXXRSAFSLSNTQAYLKDPLPISWASFSNFSMV 90
N + S++ + L S+ P S T A ++YL+ PL S S S + +
Sbjct: 300 NTTITSVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTAL 359
Query: 89 RLSIP 75
R SIP
Sbjct: 360 RTSIP 364
>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 151 WVLDKLKAERXXVSQSILLSGSSKLASTMLPSLMLW 258
W+L K AER +LL+ S S S+++W
Sbjct: 163 WLLAKNNAERLVYKSHLLLNAYSPPKSASASSVIVW 198
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 166 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 38
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 490 EGSILILKKIGYNPAAVAFVPISGWARRQHVGAFQPKCL 606
+G++LI+K + + A V GW R + A CL
Sbjct: 322 QGAVLIVKTVHFRHAHVLVHCSDGWDRTSQLCALPQLCL 360
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 121 PGPPSRTSRWYVCQYHHIC 65
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.1
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +3
Query: 204 ALWKFETSKYYVTIIDALDT--EISSRT*SQEPL---RLIALCSS*LPVPVNSKL 353
+ WK E +Y T A+ T +I RT +PL R I CSS L PV SKL
Sbjct: 241 SFWK-EFIQYGATWYTAVPTIHQILLRTPPPKPLPRIRFIRSCSSPLAPPVLSKL 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,178
Number of Sequences: 5004
Number of extensions: 56913
Number of successful extensions: 211
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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