Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0934
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           99   1e-21
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              92   3e-19
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                87   1e-17
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 49   3e-06
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              36   0.036
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    31   0.59 
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   29   2.4  
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)                   29   2.4  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =   99 bits (238), Expect = 1e-21
 Identities = 43/88 (48%), Positives = 64/88 (72%)
 Frame = +2

Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
           GH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T GVK L++ VN
Sbjct: 231 GHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVN 290

Query: 437 KMDSTEPPYSEPRFEEIKKEVSSYSRRL 520
           KMD     ++E R+EEIK +++ + +++
Sbjct: 291 KMDDPTVKWNEERYEEIKVKLTPFLKKV 318



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +1

Query: 64  YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEER 204


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 42/63 (66%), Positives = 50/63 (79%)
 Frame = +2

Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
           GH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTREHA+L  +LGV QLIV +N
Sbjct: 22  GHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAIN 81

Query: 437 KMD 445
           K+D
Sbjct: 82  KLD 84


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 39/42 (92%), Positives = 41/42 (97%)
 Frame = +1

Query: 1   INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 126
           INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 8   INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = +3

Query: 186 GITIDIALWKFETSKYYVTIIDA 254
           GITIDIALWKFET KYYVT+IDA
Sbjct: 22  GITIDIALWKFETLKYYVTVIDA 44



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 124 MGKGSFKYAWVLDKLKAER 180
           MGKGSFKYAWVLDKLKAER
Sbjct: 1   MGKGSFKYAWVLDKLKAER 19



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +2

Query: 257 GHRDFIKNMITGTSQ 301
           GHRDFIKNMITGTSQ
Sbjct: 46  GHRDFIKNMITGTSQ 60


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 20/83 (24%), Positives = 39/83 (46%)
 Frame = +2

Query: 251 CSGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG 430
           C GH   +  M+ G +  D A+L++A              QT EH      + +K +++ 
Sbjct: 71  CPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHILIL 124

Query: 431 VNKMDSTEPPYSEPRFEEIKKEV 499
            NK+D  +   ++ ++++I K V
Sbjct: 125 QNKIDLVKESQAKDQYDQILKFV 147


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 4  NIVVIGHVDSGKSTTTGHLIYKCG 75
          N+ VI HVD GKST T  L+ K G
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
 Frame = -1

Query: 507  YEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLEI 355
            Y+D S    L+S N   L   ++E IL TPT    +    + K C      +   P   +
Sbjct: 797  YQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPSV 856

Query: 354  PASNSPVPAAT 322
               NSP+P+ T
Sbjct: 857  TNGNSPIPSGT 867


>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
          Length = 1389

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 424  DELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRASM 245
            D +    GE+   ML G+ + RD      G G   +H  + +  + DH+L  +  +R  M
Sbjct: 937  DHMLVGVGETRDHMLVGVGMTRDHML--VGVGETRDHMLVGVGETRDHMLVGVGETRDHM 994

Query: 244  MV 239
            +V
Sbjct: 995  LV 996



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 424  DELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRASM 245
            D +    GE+   ML G+   RD      G G   +H  + +  + DH+L  +  +R  M
Sbjct: 871  DHMLVGVGETRDHMLVGVGETRDHML--VGVGETRDHMLVGVGETRDHILVGVGETRDHM 928

Query: 244  MV 239
            +V
Sbjct: 929  LV 930



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 424  DELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRASM 245
            D +    GE+   ML G+   RD      G G   +H  + +  + DH+L  + ++R  M
Sbjct: 1003 DHMLVGVGETRDHMLVGVGETRDHML--MGVGETRDHMLVGVGMTRDHMLVGVEMTRDHM 1060

Query: 244  MV 239
            +V
Sbjct: 1061 LV 1062



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 424  DELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRASM 245
            D +    GE+   ML G+   RD      G G   +H  + +  + DH+L  +  +R  M
Sbjct: 959  DHMLVGVGETRDHMLVGVGETRDHML--VGVGETRDHMLVGVGETRDHMLVGVGETRDHM 1016

Query: 244  MV 239
            +V
Sbjct: 1017 LV 1018



 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -3

Query: 424  DELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRASM 245
            D +    GE+   +L G+   RD      G G   +H  + +  + DH+L  + ++R  M
Sbjct: 904  DHMLVGVGETRDHILVGVGETRDHML--VGVGETRDHMLVGVGETRDHMLVGVGMTRDHM 961

Query: 244  MV 239
            +V
Sbjct: 962  LV 963


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 4    NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 102
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 1   INIVVIGHVDSGKSTTTGHLIY 66
           I + V+G+V+SGKST  G L Y
Sbjct: 113 IRMAVLGNVESGKSTLLGVLTY 134


>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6116

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -3

Query: 361  RDTSFEFTG--TGSYDEHSAISLRG--SCDHVLDEISVSRASMMVT*YLLVSNFQRAISI 194
            +DTS   T   TG+   H A+S  G  S  HVLD  SVS  S+ ++     +N  + +SI
Sbjct: 919  QDTSDTLTYALTGTNSAHFAVSSTGMISTAHVLDRESVSSYSLTLSVSDGTANVTQGVSI 978

Query: 193  VI 188
             +
Sbjct: 979  TV 980


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 317 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 493
           ++VAA   EF A ++KNG     ++  F  G + QL +G + M+ TE P   P FE++K 
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424

Query: 494 EVSS 505
              S
Sbjct: 425 RTVS 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,725,456
Number of Sequences: 59808
Number of extensions: 442779
Number of successful extensions: 1603
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)