Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0934
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 161 5e-40
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 161 5e-40
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 130 8e-31
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 130 8e-31
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 125 3e-29
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 108 3e-24
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 108 3e-24
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 99 2e-21
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 69 4e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 69 4e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 58 4e-09
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 58 4e-09
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 58 4e-09
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 37 0.014
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.074
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.13
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.17
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 31 0.52
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 0.52
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.52
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 30 1.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 3.7
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 3.7
Z49909-13|CAA90115.2| 215|Caenorhabditis elegans Hypothetical p... 28 4.9
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 161 bits (390), Expect = 5e-40
Identities = 79/110 (71%), Positives = 86/110 (78%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
GHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV N
Sbjct: 94 GHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACN 153
Query: 437 KMDSTEPPYSEPRFEEIKKEVSSYSRRLATTQLLSLSCPFLDGHGDNMLE 586
KMDSTEPP+SE RF EI EVS + +++ P +GDNMLE
Sbjct: 154 KMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLE 203
Score = 130 bits (314), Expect = 8e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER
Sbjct: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +3
Query: 84 QTYHREVREGGPGNG*RILQICLGIGQTKG*AXVGITIDIALWKFETSKYYVTIIDA 254
+ + +E +E G G+ + + + K GITIDIALWKFET+KYY+TIIDA
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDA 92
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/43 (53%), Positives = 27/43 (62%)
Frame = +1
Query: 508 LKKIGYNPAAVAFVPISGWARRQHVGAFQPKCLGFKGWXVERK 636
+KKIGYNP AV FVPISG+ ++ FKGW VERK
Sbjct: 178 IKKIGYNPKAVPFVPISGF-NGDNMLEVSSNMPWFKGWAVERK 219
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 161 bits (390), Expect = 5e-40
Identities = 79/110 (71%), Positives = 86/110 (78%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
GHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV N
Sbjct: 94 GHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACN 153
Query: 437 KMDSTEPPYSEPRFEEIKKEVSSYSRRLATTQLLSLSCPFLDGHGDNMLE 586
KMDSTEPP+SE RF EI EVS + +++ P +GDNMLE
Sbjct: 154 KMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLE 203
Score = 130 bits (314), Expect = 8e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER
Sbjct: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +3
Query: 84 QTYHREVREGGPGNG*RILQICLGIGQTKG*AXVGITIDIALWKFETSKYYVTIIDA 254
+ + +E +E G G+ + + + K GITIDIALWKFET+KYY+TIIDA
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDA 92
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/43 (53%), Positives = 27/43 (62%)
Frame = +1
Query: 508 LKKIGYNPAAVAFVPISGWARRQHVGAFQPKCLGFKGWXVERK 636
+KKIGYNP AV FVPISG+ ++ FKGW VERK
Sbjct: 178 IKKIGYNPKAVPFVPISGF-NGDNMLEVSSNMPWFKGWAVERK 219
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 130 bits (314), Expect = 8e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER
Sbjct: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67
Score = 113 bits (271), Expect = 1e-25
Identities = 58/79 (73%), Positives = 63/79 (79%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
GHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+
Sbjct: 94 GHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VS 150
Query: 437 KMDSTEPPYSEPRFEEIKK 493
T P S R + I++
Sbjct: 151 LRSPTRSPDSSRRSDTIQR 169
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +3
Query: 84 QTYHREVREGGPGNG*RILQICLGIGQTKG*AXVGITIDIALWKFETSKYYVTIIDA 254
+ + +E +E G G+ + + + K GITIDIALWKFET+KYY+TIIDA
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDA 92
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 130 bits (314), Expect = 8e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER
Sbjct: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67
Score = 56.0 bits (129), Expect(2) = 3e-18
Identities = 27/56 (48%), Positives = 34/56 (60%)
Frame = +2
Query: 419 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYSRRLATTQLLSLSCPFLDGHGDNMLE 586
L+V NKMDSTEPP+SE RF EI EVS + +++ P +GDNMLE
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLE 169
Score = 53.2 bits (122), Expect(2) = 3e-18
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVA 328
GHRDFIKNMITGTSQADCAVL+VA
Sbjct: 94 GHRDFIKNMITGTSQADCAVLVVA 117
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +3
Query: 84 QTYHREVREGGPGNG*RILQICLGIGQTKG*AXVGITIDIALWKFETSKYYVTIIDA 254
+ + +E +E G G+ + + + K GITIDIALWKFET+KYY+TIIDA
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDA 92
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/43 (53%), Positives = 27/43 (62%)
Frame = +1
Query: 508 LKKIGYNPAAVAFVPISGWARRQHVGAFQPKCLGFKGWXVERK 636
+KKIGYNP AV FVPISG+ ++ FKGW VERK
Sbjct: 144 IKKIGYNPKAVPFVPISGF-NGDNMLEVSSNMPWFKGWAVERK 185
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 125 bits (301), Expect = 3e-29
Identities = 57/60 (95%), Positives = 58/60 (96%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK +
Sbjct: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 108 bits (260), Expect = 3e-24
Identities = 53/89 (59%), Positives = 66/89 (74%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
GH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VN
Sbjct: 257 GHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVN 316
Query: 437 KMDSTEPPYSEPRFEEIKKEVSSYSRRLA 523
K+D+ + +S+ RF+EIK +S + R A
Sbjct: 317 KLDTVD--WSQDRFDEIKNNLSVFLTRQA 343
Score = 79.8 bits (188), Expect = 2e-15
Identities = 34/60 (56%), Positives = 45/60 (75%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+ + ER
Sbjct: 171 INLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEER 230
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 108 bits (260), Expect = 3e-24
Identities = 53/89 (59%), Positives = 66/89 (74%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
GH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VN
Sbjct: 275 GHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVN 334
Query: 437 KMDSTEPPYSEPRFEEIKKEVSSYSRRLA 523
K+D+ + +S+ RF+EIK +S + R A
Sbjct: 335 KLDTVD--WSQDRFDEIKNNLSVFLTRQA 361
Score = 79.8 bits (188), Expect = 2e-15
Identities = 34/60 (56%), Positives = 45/60 (75%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+ + ER
Sbjct: 189 INLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEER 248
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 99.1 bits (236), Expect = 2e-21
Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
GH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L T GVK L++ VN
Sbjct: 196 GHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVN 255
Query: 437 KMDSTEPPYSEPRFEEIKKEVSSYSRRLA---TTQLLSLSCPFLDG 565
KMD + E RF+EI+ +++ + R+L T + + C L G
Sbjct: 256 KMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTG 301
Score = 70.1 bits (164), Expect = 1e-12
Identities = 30/60 (50%), Positives = 44/60 (73%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
IN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D ER
Sbjct: 110 INMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMDTNDEER 169
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 68.5 bits (160), Expect = 4e-12
Identities = 36/71 (50%), Positives = 44/71 (61%)
Frame = +2
Query: 242 HH*CSGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 421
H C GH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK +
Sbjct: 112 HTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNM 164
Query: 422 IVGVNKMDSTE 454
+ +NK D E
Sbjct: 165 AIFINKADLVE 175
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 68.5 bits (160), Expect = 4e-12
Identities = 36/71 (50%), Positives = 44/71 (61%)
Frame = +2
Query: 242 HH*CSGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 421
H C GH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK +
Sbjct: 112 HTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNM 164
Query: 422 IVGVNKMDSTE 454
+ +NK D E
Sbjct: 165 AIFINKADLVE 175
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 58.4 bits (135), Expect = 4e-09
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 242 HH*CSGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--K 415
H C GH D+IKNMITG +Q + A+L+VAA G QTREH LLA +GV
Sbjct: 116 HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLD 168
Query: 416 QLIVGVNKMDSTEPPYSEPR 475
++V +NK+D E P +E R
Sbjct: 169 NIVVFMNKVD--EVPDAETR 186
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 171
+N+ IGHVD GK+T T ++ G R E + +E +G A+ L+
Sbjct: 50 LNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFHLEYET 109
Query: 172 AER 180
A+R
Sbjct: 110 AKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 58.4 bits (135), Expect = 4e-09
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 242 HH*CSGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--K 415
H C GH D+IKNMITG +Q + A+L+VAA G QTREH LLA +GV
Sbjct: 117 HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLD 169
Query: 416 QLIVGVNKMDSTEPPYSEPR 475
++V +NK+D E P +E R
Sbjct: 170 NIVVFMNKVD--EVPDAETR 187
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 171
+N+ IGHVD GK+T T ++ G R E + +E +G A+ L+
Sbjct: 51 LNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFHLEYET 110
Query: 172 AER 180
A+R
Sbjct: 111 AKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 58.4 bits (135), Expect = 4e-09
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 242 HH*CSGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--K 415
H C GH D+IKNMITG +Q + A+L+VAA G QTREH LLA +GV
Sbjct: 117 HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLD 169
Query: 416 QLIVGVNKMDSTEPPYSEPR 475
++V +NK+D E P +E R
Sbjct: 170 NIVVFMNKVD--EVPDAETR 187
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 171
+N+ IGHVD GK+T T ++ G R E + +E +G A+ L+
Sbjct: 51 LNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFHLEYET 110
Query: 172 AER 180
A+R
Sbjct: 111 AKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/85 (28%), Positives = 42/85 (49%)
Frame = +2
Query: 251 CSGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG 430
C GH I+ ++ ++ D A++I+ + AGI QT EH LLA ++I+
Sbjct: 79 CPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPNRVIIV 131
Query: 431 VNKMDSTEPPYSEPRFEEIKKEVSS 505
+NK D E ++++K + S
Sbjct: 132 LNKCDLAEKSKISESAKKVRKGLKS 156
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTT 51
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.074
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCGGI 81
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 438 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 310
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCGGID 84
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 120
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCG 75
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation
factor protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCG 75
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 31.5 bits (68), Expect = 0.52
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = +2
Query: 251 CSGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG 430
C GH + M+ G + D A L+VA QT EH + + L++
Sbjct: 134 CPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQLNHLMIL 187
Query: 431 VNKMDSTEPPYSEPRFEEI 487
NK+D + + +E+I
Sbjct: 188 QNKVDIIKESQARENYEQI 206
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/63 (38%), Positives = 28/63 (44%)
Frame = +2
Query: 257 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 436
GH F G AD VL+VAA G E QT + A V QL+V VN
Sbjct: 213 GHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-QLVVAVN 264
Query: 437 KMD 445
K+D
Sbjct: 265 KID 267
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 1 INIVVIGHVDSGKSTTT 51
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 82 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
+KR ++ EKE + F Y LDK+K ER
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKER 304
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 82 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 180
+KR ++ EKE + F Y LDK+K ER
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKER 239
>Z49909-13|CAA90115.2| 215|Caenorhabditis elegans Hypothetical
protein C14A4.11 protein.
Length = 215
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 410 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYSRRLATT 529
+K+L+ +N + P ++P E+ K+E YS+R + T
Sbjct: 138 IKKLLEAINAVYRIVPLTAQPAVEKRKREFVHYSKRFSNT 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,302,576
Number of Sequences: 27780
Number of extensions: 323962
Number of successful extensions: 1031
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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