Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0933
         (507 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O05000 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    33   2.8  
UniRef50_Q232Z7 Cluster: Putative uncharacterized protein; n=1; ...    32   6.5  

>UniRef50_O05000 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=32; Embryophyta|Rep: NADH-ubiquinone oxidoreductase
           chain 2 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 499

 Score = 33.5 bits (73), Expect = 2.8
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = -3

Query: 493 TFVNYLHRLAEVLQLIGNFDYEP--QNRSLFPXLKLIV*NRGRQRGAPVRFXMHPCWTNV 320
           TF+  +H +  V      +DY P   N      L +++       GAP+    H  W N 
Sbjct: 29  TFILLIHGV--VFSTSKKYDYPPLASNVGWLGLLSVLITLLLLAAGAPLLTIAHLFWNN- 85

Query: 319 NL*QPERFTYFCQTAIYSK*SVSLGLCID 233
            L + + FTYFCQ  +    + ++ +C D
Sbjct: 86  -LFRRDNFTYFCQIFLLLSTAGTISMCFD 113


>UniRef50_Q232Z7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 542

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -2

Query: 206 LITRTYFLLVCDCISNRLRVDRAFKTTK*CEIIIFFQYRTKLNDDSHLDNCLTTGNSKYI 27
           +I++T  L   DCIS +L  ++     +    IIF Q   K ND++   +  T  N KYI
Sbjct: 120 IISQTDLLSNIDCISEQLAEEQRELQEQEKRCIIFTQNPNKSNDNTENKSTHTKSNEKYI 179


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,574,328
Number of Sequences: 1657284
Number of extensions: 7356636
Number of successful extensions: 11816
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11814
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)