Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0933
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    26   2.8  
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    26   2.8  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    25   4.9  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   6.5  

>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +1

Query: 91  RY*KKIIISHYLVVLNARSTRSLFEIQSHTNKKYVRVIRYAQG 219
           RY  +++ +H+ + +N     ++ EI++   ++  RVI+   G
Sbjct: 87  RYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPG 129


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +1

Query: 91  RY*KKIIISHYLVVLNARSTRSLFEIQSHTNKKYVRVIRYAQG 219
           RY  +++ +H+ + +N     ++ EI++   ++  RVI+   G
Sbjct: 87  RYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPG 129


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 71  SHLDNCLTTGNSKYISNYKKPAE 3
           SHLD C  T N K  +    PAE
Sbjct: 301 SHLDVCRHTDNQKAFAKLSSPAE 323


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 3   FSWFLIIGDIFRVPGR 50
           F W L+ GD+FR P R
Sbjct: 312 FGWKLVHGDVFRPPRR 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,446
Number of Sequences: 5004
Number of extensions: 32956
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)