Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0933
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 206 LITRTYFLLVCDCISNRLRVDRAFKTT 126
           + TR   LLV +   NRL  DR  +TT
Sbjct: 304 IFTRLEQLLVLNLAGNRLGSDRVDETT 330


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 420 FCGS*SKFPINCSTSASRW 476
           FC   SK PI+ +T    W
Sbjct: 285 FCPDGSKVPIDANTKPCTW 303


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 420 FCGS*SKFPINCSTSASRW 476
           FC   SK PI+ +T    W
Sbjct: 285 FCPDGSKVPIDANTKPCTW 303


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 420 FCGS*SKFPINCSTSASRW 476
           FC   SK PI+ +T    W
Sbjct: 285 FCPDGSKVPIDANTKPCTW 303


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 435 ITSRKIEVFFPXLS**SRTEVGNAAP 358
           +T+R + +FF  LS  +R   GNA P
Sbjct: 1   MTTRILLLFFLLLSSCTRPSRGNAVP 26


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 435 ITSRKIEVFFPXLS**SRTEVGNAAP 358
           +T+R + +FF  LS  +R   GNA P
Sbjct: 1   MTTRILLLFFLLLSSCTRPSRGNAVP 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,002
Number of Sequences: 438
Number of extensions: 2377
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)