Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0933
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id...    27   7.3  
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id...    27   7.3  

>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
           identical to 20S proteasome beta subunit PBB1 (PBB1)
           GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
           677-692 (1998)); contains Pfam profile: PF00227
           proteasome A-type and B-type;
          Length = 273

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 83  LNDDSHLDNC-LTTGNSKYISNYKKP 9
           L   S++D C +T GN +Y+ NY +P
Sbjct: 206 LGSGSNVDICVITKGNKEYLRNYMEP 231


>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
           identical to 20S proteasome beta subunit PBB1 (PBB1)
           GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
           677-692 (1998)); contains Pfam profile: PF00227
           proteasome A-type and B-type;
          Length = 267

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 83  LNDDSHLDNC-LTTGNSKYISNYKKP 9
           L   S++D C +T GN +Y+ NY +P
Sbjct: 206 LGSGSNVDICVITKGNKEYLRNYMEP 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,385,280
Number of Sequences: 28952
Number of extensions: 162776
Number of successful extensions: 227
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)