Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0932
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  132   3e-31
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   3e-13
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  132 bits (318), Expect = 3e-31
 Identities = 60/84 (71%), Positives = 73/84 (86%)
 Frame = +2

Query: 2   IDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGVIL 181
           +DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGVIL
Sbjct: 3   VDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGVIL 62

Query: 182 ANSSIDITLHDTYYVVAHFHYVLS 253
           ANSS+D+ +HDTYYVVAHFHYVLS
Sbjct: 63  ANSSLDVVMHDTYYVVAHFHYVLS 86



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 35/56 (62%), Positives = 38/56 (67%)
 Frame = +1

Query: 256 GAVFAIIGGFIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRR 423
           GAVFAI  GF   +   TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRR
Sbjct: 88  GAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRR 143



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 576 SIXWYPNLPPAEHSYNELP 632
           S+ W    PPA H+YNELP
Sbjct: 199 SLEWVQQSPPALHTYNELP 217


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 35/56 (62%), Positives = 38/56 (67%)
 Frame = +1

Query: 256 GAVFAIIGGFIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRR 423
           GAVFAI  GF   +   TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRR
Sbjct: 2   GAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRR 57



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 576 SIXWYPNLPPAEHSYNELP 632
           S+ W    PPA H+YNELP
Sbjct: 113 SLEWVQQSPPALHTYNELP 131


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 576 SIXWYPNLPPAEHSYNELP 632
           S+ W    PPA H+YNELP
Sbjct: 67  SLEWVQQSPPALHTYNELP 85


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 576 SIXWYPNLPPAEHSYNELP 632
           S+ W    PPA H+YNELP
Sbjct: 67  SLEWVQQSPPALHTYNELP 85


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 576 SIXWYPNLPPAEHSYNELP 632
           S+ W    PPA H+YNELP
Sbjct: 67  SLEWVQQSPPALHTYNELP 85


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 576 SIXWYPNLPPAEHSYNELP 632
           S+ W    PPA H+YNELP
Sbjct: 67  SLEWVQQSPPALHTYNELP 85


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 576 SIXWYPNLPPAEHSYNELP 632
           S+ W    PPA H+YNELP
Sbjct: 67  SLEWVQQSPPALHTYNELP 85


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 294 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 416
           + FIY   + FL +KN  F+  YW+   YN F        W T
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,131,363
Number of Sequences: 59808
Number of extensions: 202778
Number of successful extensions: 398
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)