Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0931
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   0.98 
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   6.9  

>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 200 INELEFRIIHSINRTVFSKLIKPSRQSKLLTFYFETLIPFRSKKN 334
           IN L+  I  S N   +  L KP      LT YF TL+ +   +N
Sbjct: 104 INVLQLNINASDNSLAY--LSKPEESYNFLTIYFSTLLSYEKVEN 146


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 433 NTLLIVS*IYASKYLCIFIWNI 498
           NTLLI +  Y  KY    +WNI
Sbjct: 353 NTLLIAASSYGQKYGAAKVWNI 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,539
Number of Sequences: 5004
Number of extensions: 41651
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)