Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0931
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0182 - 1466097-1466147,1466197-1466331,1466659-1466777,146...    30   1.8  
11_01_0360 - 2742955-2743072,2743451-2743597,2743682-2743773,274...    27   9.4  
05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290...    27   9.4  
01_01_0118 - 871481-872606,872795-872950,873051-873817                 27   9.4  

>03_01_0182 -
           1466097-1466147,1466197-1466331,1466659-1466777,
           1467005-1467064,1467206-1467296,1467767-1467955,
           1469310-1469393,1469540-1469701,1469790-1469933,
           1470053-1470247
          Length = 409

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 152 ETFGNSINL-PPSISKLINELEFRIIHSINRTVFSKLIKPSRQSKLLTFYFETLIP 316
           E FG +I L P  I + +NE+    + S N     K++KP R+   +   F  L P
Sbjct: 184 EAFGVNIELGPEGIKRCVNEVGVGFMMSANYHPAMKIVKPVRKKLKIKTVFNILGP 239


>11_01_0360 -
           2742955-2743072,2743451-2743597,2743682-2743773,
           2744408-2744507,2744590-2744790,2745254-2745459,
           2745619-2746045,2746172-2746411,2746514-2746719,
           2747081-2747176,2747348-2747521
          Length = 668

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 143 LETETFGNSINLPPSISKLINELEFRIIHSINRTVFSKLIKPSRQSKL 286
           LET  +     +PP I  L+N++  ++I + N+    K+ + +R S L
Sbjct: 199 LETAVYRTPTLIPPRILPLMNDIAQQLIQAGNQQSCYKIYRDTRGSAL 246


>05_06_0136 +
           25928152-25928659,25928767-25928899,25928987-25929058,
           25929150-25929221,25929507-25929670,25929760-25930025,
           25930115-25930241,25930599-25930667,25930765-25930957,
           25931053-25931299,25931342-25931470,25932367-25932654
          Length = 755

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +2

Query: 422 FHIIIRY*LFHESTHLNIYVYLYGIYNSHKI*YNPFDNVVLSFAHSNTFRFF 577
           F+I +   + +   +  +Y+Y + IYN++     P  N+ ++  +++T R F
Sbjct: 97  FYINLNGNMMYSKGYKPVYLYAHAIYNTNPFLRYPQYNISINATYNSTMRPF 148


>01_01_0118 - 871481-872606,872795-872950,873051-873817
          Length = 682

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 358 TPRCIMYSIVLVSLRVFTMLTVSYYNTLLIVS*IYASKYL 477
           +P  I+  I+L +L  +TML  +Y    L+V    A KYL
Sbjct: 286 SPYNILLGIILYALMFWTMLARTYLLAPLVVLIFLAQKYL 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,816,463
Number of Sequences: 37544
Number of extensions: 206998
Number of successful extensions: 332
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)