Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0931
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)           29   4.2  
SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)                  28   5.5  
SB_17443| Best HMM Match : RasGAP (HMM E-Value=4.4)                    27   9.7  
SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)                 27   9.7  
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)            27   9.7  

>SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)
          Length = 823

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
 Frame = +2

Query: 455 ESTHLNIYVYLYGIYNSHKI*YNP--FDNVV--LSFAHSNT-FRFFRR 583
           + TH+N+  Y YGI+ ++K    P  F  V+  LSF HS++ F   RR
Sbjct: 53  KKTHVNMIKYNYGIFKTNKS-TKPAAFSKVIRLLSFRHSSSLFHILRR 99


>SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)
          Length = 337

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 245 VFSKLIKPSRQSKLLTFYFETLIPFRSKKNPCIFCYRL 358
           V   ++  S + KL      T+I   S  NPC+FC+R+
Sbjct: 247 VIRTILGVSPEWKLAWNITTTVIYINSSMNPCLFCWRM 284


>SB_17443| Best HMM Match : RasGAP (HMM E-Value=4.4)
          Length = 187

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 152 ETFGNSINLPPSISKLINELEFRIIHSI 235
           +T G  I  PP   KL+++  FR +H I
Sbjct: 11  DTLGKVIKKPPLTDKLLSKPPFRFLHDI 38


>SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)
          Length = 443

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 152 ETFGNSINLPPSISKLINELEFRIIHSI 235
           +T G  I  PP   KL+++  FR +H I
Sbjct: 11  DTLGKVIKKPPLTDKLLSKPPFRFLHDI 38


>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
          Length = 1235

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 200  INELEFRIIHSINRTVFSKLI--KPSRQSKLLTFYFETLIPFRSKKNPCIFCYRLPR 364
            +++L    +  +N+ +F  L+  K +   K++   F  ++ FR++ N C +    PR
Sbjct: 1134 LDDLHHHHVEYLNKAIFRSLLNKKAAPVMKIINDIFSLVLKFRAQLNSCPWQQATPR 1190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,762,799
Number of Sequences: 59808
Number of extensions: 260218
Number of successful extensions: 529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)