Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0931
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20180.1 68414.m02522 hypothetical protein similar to At14a (...    31   0.85 
At5g02750.1 68418.m00217 zinc finger (C3HC4-type RING finger) fa...    29   2.0  
At1g43245.1 68414.m04985 expressed protein                             29   2.0  
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote...    29   2.6  
At4g12960.1 68417.m02025 gamma interferon responsive lysosomal t...    28   6.0  
At1g49290.1 68414.m05525 expressed protein ; expression supporte...    27   7.9  

>At1g20180.1 68414.m02522 hypothetical protein similar to At14a
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 391

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +2

Query: 188 ISKLINELEFRIIHSINRTVFSKLIKPSRQSKLLTFYFE 304
           + +++NE +FRI+H  N  + +KL    R+ +    +F+
Sbjct: 186 LCRIVNEAQFRIVHDANSDLLTKLTSKKRRIRRKIRFFK 224


>At5g02750.1 68418.m00217 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 283

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +2

Query: 293 FYFETLIPFRSKKNPCIFC-YRLP 361
           F+++ ++P+ SKKN C FC ++LP
Sbjct: 236 FHWKCILPWLSKKNTCPFCRFQLP 259


>At1g43245.1 68414.m04985 expressed protein
          Length = 558

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 149 TETFGNSINLPPSISKLINELEFRIIHSINRTVFSKLIKPSRQSKLLT 292
           T++F NS   PP I+ ++       +H +N T       P R + LLT
Sbjct: 59  TDSFTNSPQFPPEITPILPSDIRTSLHLLNSTAVDTSSSPHRLNNLLT 106


>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 666

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +2

Query: 107 WFWPY*GNVTDMLETETFGNSINLPP---SISKLINELEF---RIIHSINRTVFSKL 259
           W W   G V+  L    FG SI + P   S+   + EL     R  H++N T F+ L
Sbjct: 99  WLWSMPGLVSVNLSRNRFGGSIRVIPVNGSVLSAVKELNLSFNRFKHAVNFTGFTNL 155


>At4g12960.1 68417.m02025 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 233

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 106 LANIFYGKTSLPDVIISETSLIKLPFQKCK 17
           + N + GKT+LP V  S  S+ K P +K K
Sbjct: 192 ICNAYKGKTTLPKVCNSSASMSKSPERKWK 221


>At1g49290.1 68414.m05525 expressed protein ; expression supported
           by MPSS
          Length = 338

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 182 PSISKLINELEFRIIHSINRTVFSKLI 262
           P  S ++   EF   H+I+RT+FS+L+
Sbjct: 13  PLSSIVVTRDEFNAFHTIDRTLFSRLV 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,150,255
Number of Sequences: 28952
Number of extensions: 190903
Number of successful extensions: 404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)