Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0930
         (629 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8ITJ9 Cluster: Transposase; n=7; Arthropoda|Rep: Trans...    38   0.15 
UniRef50_Q4YAI9 Cluster: Putative uncharacterized protein; n=1; ...    33   4.3  
UniRef50_Q1E4B7 Cluster: Putative uncharacterized protein; n=12;...    33   7.5  

>UniRef50_Q8ITJ9 Cluster: Transposase; n=7; Arthropoda|Rep:
           Transposase - Bombyx mori (Silk moth)
          Length = 346

 Score = 38.3 bits (85), Expect = 0.15
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +3

Query: 3   DWLAAREIDFIRH*DW 50
           DWLAAREIDFIRH DW
Sbjct: 259 DWLAAREIDFIRHEDW 274


>UniRef50_Q4YAI9 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 89

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -1

Query: 275 IFTYIHVHFMHALKYCYIVFLRVKVLSKNEIDICLCMCL 159
           ++TYIH++    +  C  V+ R+ +     + +C+C+C+
Sbjct: 31  VYTYIHIYIHICVCICICVYTRIYIYIHVYVCVCVCVCV 69


>UniRef50_Q1E4B7 Cluster: Putative uncharacterized protein; n=12;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 775

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +3

Query: 144 IAPILKAHT*TYIYLVLTQHFNSQENNITVFQCVHKMNMNIRKYLRLRLMRPK 302
           + P L+ H   Y++L L +H   +E N      VHKMN N +KY   +++  K
Sbjct: 713 LPPDLQTHNIFYVFL-LHEHKTCKEINSLPHHKVHKMNKNEKKYQICKIINLK 764


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,293,384
Number of Sequences: 1657284
Number of extensions: 8912457
Number of successful extensions: 16042
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16028
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)