Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0930
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_15799| Best HMM Match : PH (HMM E-Value=0.76)                       27   9.5  

>SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 882

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 113 YCSIRTIAYINSTHFEGTYINIYLSRSYSAL*LAGKQYNSI 235
           YCSI   +   S HF   Y +IY +  Y ++  A   Y SI
Sbjct: 737 YCSIYFASGQCSIHFASGYCSIYFASGYCSIHFASSVYFSI 777


>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2578

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 237  QCVHKMNMNIRKYLRLRLMRPKIRHV*RAKCHCHVSSAVC 356
            QC   +N N+R  +R+  + P   HV   KCH + S   C
Sbjct: 1221 QCCELLN-NLRCDIRVSYVFPDCNHVSSKKCHVNPSQLKC 1259


>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
          Length = 836

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 230 CYIVFLRVKVLSKNEIDICLCMCLQNGCYLYKQ 132
           C +   RV++ S  E DICL  C++  C+   Q
Sbjct: 68  CLLFDTRVRIYS--EPDICLTTCMEQSCFKITQ 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,682,590
Number of Sequences: 59808
Number of extensions: 286093
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)