Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0930
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 65  RFESVRFIDLYSRDTTYCSIRTIAYINSTHFEGTYINIYLSRSYSAL 205
           R ES  F+ LY+  T   S   +  + +  F G ++   L+ S +A+
Sbjct: 373 RIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAI 419


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 443 YXNNN*NVFYRXSRKSMP*NYYXMYFN 523
           Y NNN N  Y     +   NY  +Y+N
Sbjct: 329 YNNNNYNNNYNNYNNNNYNNYKKLYYN 355


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 336 DNDIWRAKHGGFSASLDGDGDI 271
           + + +R   G  S  LDG GD+
Sbjct: 569 NEETYRGGKGALSCLLDGKGDV 590


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 336 DNDIWRAKHGGFSASLDGDGDI 271
           + + +R   G  S  LDG GD+
Sbjct: 569 NEETYRGGKGALSCLLDGKGDV 590


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 336 DNDIWRAKHGGFSASLDGDGDI 271
           + + +R   G  S  LDG GD+
Sbjct: 569 NEETYRGGKGALSCLLDGKGDV 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,542
Number of Sequences: 438
Number of extensions: 2900
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)