Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0929
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    27   3.0  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    26   5.2  

>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -1

Query: 283 HPRDHV---GGAHTSSPSWQLRTSLKRLRNSGSNFS 185
           HP  ++   GG  T++  W +R   K  RN GS  S
Sbjct: 309 HPNGNILATGGQDTTAKVWDIRALGKSFRNLGSQMS 344


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 48  HRKLPHGARILSVKEYYDWIRKYLKAVEQ 134
           H+KL     IL +  + +W +KY + V++
Sbjct: 93  HKKLGEQLNILVINPFANWSKKYSRRVDE 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,033
Number of Sequences: 5004
Number of extensions: 32270
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)